View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2048_low_6 (Length: 292)
Name: NF2048_low_6
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 41743898 - 41743624
Alignment:
| Q |
4 |
atatgtgtggtaccacgttcatatatgttttaagatgaagtccatctgcatatggatagagttgcactgctaaagtataatttaaaaatttacgttatta |
103 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41743898 |
atatgtgtgataccacgttcatatatgtcttaagatgaagtccatctgcatatggatagagtcgcactgctaaagtataatttaaaaatttacgttatta |
41743799 |
T |
|
| Q |
104 |
agtgataaaatgttgagtttataacaaactttttattaaatatattctttcttatttaataatttatcgtcagaaatagggtgatacagtcaaccctcaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41743798 |
agtgataaaatgttgagtttataacatactttttattaaatatattctttcttatttaataatttatcgtcagaaatagggtgatacagtcaaccctcaa |
41743699 |
T |
|
| Q |
204 |
catgtttatatttcttgtgg---tactgtgagatggggaaaaggataactccgttttatttcgttcacaggtaga |
275 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41743698 |
cgtgtttatatttcttgtggtactactgtgaggtggggaaaaggataactccgttttatttcgttcacaggtaga |
41743624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University