View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2048_low_7 (Length: 288)
Name: NF2048_low_7
Description: NF2048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2048_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 9046337 - 9046075
Alignment:
| Q |
18 |
agcagagtaacaaagcctttccaaaattacatacactattagcaaatatcaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9046337 |
agcaaagtaacaaagcctttccaaaattacatacaccgttagcaaataacaaactaaaattaaaattttgaaagtaaacttggtggtgaacttagcactg |
9046238 |
T |
|
| Q |
118 |
cttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattataactggnnnnnnnnnttaccccaatacgaa |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
9046237 |
cttcaatgtgtgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattatcactgg-aaaaaaaattaccccaatacgaa |
9046139 |
T |
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| Q |
218 |
aatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttggctctctgctc |
281 |
Q |
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|||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
9046138 |
aatccctagattgataaacaaactaaacccaaggtgttaatacttttattttggctctcagctc |
9046075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 71 - 282
Target Start/End: Complemental strand, 42936791 - 42936580
Alignment:
| Q |
71 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaa |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42936791 |
ctaaaattaaaattttgaaagtaaacttggtggtgaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttggaaaactaa |
42936692 |
T |
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| Q |
171 |
gattgctactgaattataactggnnnnnnnnnttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttg |
270 |
Q |
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| T |
42936691 |
gattgctactgaattatcactggaaaaaaaaattactccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttg |
42936592 |
T |
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| Q |
271 |
gctctctgctcc |
282 |
Q |
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|||||| ||||| |
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| T |
42936591 |
gctctcagctcc |
42936580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 26084700 - 26084537
Alignment:
| Q |
105 |
gaacttagcactgcttcaatgcatgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctactgaattataact--ggnnnnnnnnn |
202 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |
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| T |
26084700 |
gaacttagcactgcttcaatgtgtgcctgcaaccccttttatcataattatcatttgcaaaactaagattgctaccgaattatcactaggaaaaaaaaaa |
26084601 |
T |
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| Q |
203 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttat |
266 |
Q |
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| T |
26084600 |
ttaccccaatacgaaaatccctaaattgataaacaaactaaacccaaggcgttaatacttttat |
26084537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 42938482 - 42938437
Alignment:
| Q |
18 |
agcagagtaacaaagcctttccaaaattacatacactattagcaaa |
63 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42938482 |
agcaaagtaacaaagcctttccaaaattacatacactattagcaaa |
42938437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 203 - 281
Target Start/End: Complemental strand, 21763176 - 21763098
Alignment:
| Q |
203 |
ttaccccaatacgaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttggctctctgctc |
281 |
Q |
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|||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
21763176 |
ttaccctaatatgaaaatccctaaattgataaacaaactaaacccaaggggttaatacttttattttggctctcagctc |
21763098 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 12806805 - 12806870
Alignment:
| Q |
215 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttggctctctgct |
280 |
Q |
| |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| ||||||| |
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| T |
12806805 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttggtgctctgct |
12806870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 14444429 - 14444485
Alignment:
| Q |
215 |
gaaaatctctaaattgataaacaaactaaacccaaggcgttaatacttttattttgg |
271 |
Q |
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||||||| ||| ||||||||||||||||||||||||| ||| ||| |||||||||| |
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| T |
14444429 |
gaaaatccctagattgataaacaaactaaacccaaggggttgttacctttattttgg |
14444485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 50291309 - 50291256
Alignment:
| Q |
227 |
attgataaacaaactaaacccaaggcgttaatacttttattttggctctctgct |
280 |
Q |
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||||||||||||||||||| ||||| ||| ||| |||||||||| |||||||| |
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| T |
50291309 |
attgataaacaaactaaactcaaggggttgttacctttattttggttctctgct |
50291256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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