View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_high_2 (Length: 399)
Name: NF20490_high_2
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 5302241 - 5302005
Alignment:
| Q |
14 |
agggtagtagttccgataaggtgcctccttttctcaccaagacttataatatggttgaagatccttcaacagatgccattgtttcttggggtgctactga |
113 |
Q |
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| T |
5302241 |
agggtagtagttccgataaggtgcctccttttctcactaagacttataatatggttgaagatccttcaacggatgccattgtttcttggggtgctactga |
5302142 |
T |
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| Q |
114 |
taaaagttttattgtttggaataaagaagattttgaaaaagatttgttgtctcgatactttaaccataataacttctcaagtttcatcagacagcttaat |
213 |
Q |
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| T |
5302141 |
taaaagttttattgtttggaataaagaagattttgaaaaagatttgttgtctcgatactttaaccataataatttctcaagtttcatcagacagcttaat |
5302042 |
T |
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| Q |
214 |
acctatgtaagcgcctttaatgtacttcatttcatgg |
250 |
Q |
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| T |
5302041 |
acctatgtaagcgcctttaatgtacttcatttcatgg |
5302005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 245
Target Start/End: Complemental strand, 19100516 - 19100335
Alignment:
| Q |
64 |
atggttgaagatccttcaacagatgccattgtttcttggggtgctactgataaaagttttattgtttggaataaagaagattttgaaaaagatttgttgt |
163 |
Q |
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| T |
19100516 |
atggttgaagattcttcaactaattccattgtttcctagagttctaatggtagaagtttcattgtttcaaatccattcgattttgtaaaagatttgttac |
19100417 |
T |
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| Q |
164 |
ctcgatactttaaccataataacttctcaagttt-catcagacagcttaatacctatgtaagcgcctttaatgtacttcattt |
245 |
Q |
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| T |
19100416 |
ctagacactttaagcataataacttctcaagtttccatc-gacaattgaatacatatgtaagcaattttaatgtacttcattt |
19100335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 15620038 - 15620162
Alignment:
| Q |
90 |
cattgtttcttggggtgctactgataaaagttttattgtttggaataaagaagattttgaaaaagatttgttgtctcgatactttaaccataataacttc |
189 |
Q |
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||||||||||||| |||| || ||| |||||| |||||||||||| || |||||||| ||||||||||| || ||||||||| || ||||||||| |
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| T |
15620038 |
cattgtttcttggagtgccaccaatagaagtttcattgtttggaatccagtagattttggtgaagatttgttgcctaaatactttaagcaaaataacttc |
15620137 |
T |
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| Q |
190 |
tcaagtttcatcagacagcttaata |
214 |
Q |
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| T |
15620138 |
tcaaatttcatcaggcagcttaata |
15620162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 20681554 - 20681630
Alignment:
| Q |
164 |
ctcgatactttaaccataataacttctcaagtttcatcagacagcttaatacctatgtaagcgcctttaatgtacttc |
241 |
Q |
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| T |
20681554 |
ctcgatattttaagcataataacttctcaagtttcaacagaca-ttgaatacacatgtaagcaactttaatgtacttc |
20681630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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