View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_high_4 (Length: 385)
Name: NF20490_high_4
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 367
Target Start/End: Complemental strand, 3546611 - 3546256
Alignment:
| Q |
12 |
gattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaatccttcttttatctgtaatatgaagaat |
111 |
Q |
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| T |
3546611 |
gattatactcttgcttattctggttctcatcattgttattcccattgtcactagtttcagcagttcttgaaatccttcttttatctgtaatatgaagaat |
3546512 |
T |
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| Q |
112 |
acaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcatcgtcgtttgaatttccttatgatatcat |
211 |
Q |
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| T |
3546511 |
acaatatctgatgtattgattcttttactatgttctagtttttgtatctttgttgagttgtgtacgactcatcgtcgtttgaattgccttatgatatcat |
3546412 |
T |
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| Q |
212 |
atattgtgcttaaannnnnnngatgatgcaattcatcttatgttcatgtaaactcattacaaattagaaatgtaataattgttctatatcttggtcatta |
311 |
Q |
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| T |
3546411 |
atattgtgcttaaatttttttgatgatgcaattcatcttatgttcatgtaaactcattacaaattagaaatgtaataattgttctatatcttggtcatta |
3546312 |
T |
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| Q |
312 |
caaattagaaatagaattgatccatgttgatgtacataatttatatctgcccctct |
367 |
Q |
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| T |
3546311 |
caaattagaaatagaattgatccatgttgatgtacataatttatatctgcccctct |
3546256 |
T |
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