View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20490_high_5 (Length: 367)
Name: NF20490_high_5
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 351
Target Start/End: Complemental strand, 45787803 - 45787463
Alignment:
| Q |
15 |
cagagactgaaaattatatatacatctaaa-ttaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787803 |
cagagactgaaaattatatatacatctaaaattaaatcaagccctaaacctaaaccaattctaaattccaagaatcactttcttcagtcttgatagtttc |
45787704 |
T |
|
| Q |
114 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45787703 |
tactgaatacgatggatccatcatcttattcacgtaacaacaaatttcccagaccttcatcaatgagaaaacctcacctctacttcctcatcgctttcct |
45787604 |
T |
|
| Q |
214 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcgtaacatcaccatcatgcaccatc--- |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45787603 |
ctgtgctgccttttatctcctaggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcataacatcaccatcatgcaccatccaa |
45787504 |
T |
|
| Q |
311 |
caagtcaataagcccaccctcgatttccaatctcaccataa |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45787503 |
caagtcaataaacccaccctcgatttccaatctcaccataa |
45787463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University