View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_high_7 (Length: 341)
Name: NF20490_high_7
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 38867581 - 38867900
Alignment:
| Q |
10 |
tcgaagaatatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaa |
108 |
Q |
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| T |
38867581 |
tcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaa |
38867680 |
T |
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| Q |
109 |
atacatacagtttgagaagttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctaga |
200 |
Q |
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| T |
38867681 |
atacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctaga |
38867780 |
T |
|
| Q |
201 |
aatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcagatcc |
300 |
Q |
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| T |
38867781 |
aatatggagtatcattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaaccaacctcatgcggatcc |
38867880 |
T |
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| Q |
301 |
ctccccgttcagtgaccaggat |
322 |
Q |
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| T |
38867881 |
ct--ccgttcagtgaccaggat |
38867900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
170 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
269 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||| |||||||||||| |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
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| Q |
270 |
agccact |
276 |
Q |
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| T |
38598798 |
agtcact |
38598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
173 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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