View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_low_1 (Length: 582)
Name: NF20490_low_1
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 334 - 582
Target Start/End: Complemental strand, 3759383 - 3759135
Alignment:
| Q |
334 |
cttagaaaaacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattagtactaat |
433 |
Q |
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| T |
3759383 |
cttagaaagacaaatatccaaatggttctgttattcatgtatctatatatgatatatgcttctagcctcatgcattaacaatgacactattattactaat |
3759284 |
T |
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| Q |
434 |
caataattaactaattaactaacacgagtagttccatacacaggtagctcctcacaatacctactatctccaaacacactcaaatgatccaactcaaaaa |
533 |
Q |
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| T |
3759283 |
caataattaactaattaactaacacgggtagttccatacacaggaagctcctcacaatacctactatctccaaacacactcaaatgatccaactcaaaaa |
3759184 |
T |
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| Q |
534 |
gatcagaacttgcacaacttgccacatcatcatcatcttcatcctcttc |
582 |
Q |
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| T |
3759183 |
gatcagaacttgcacaacttgccacatcatcatcatcttcatcctcttc |
3759135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 132 - 323
Target Start/End: Complemental strand, 3759665 - 3759486
Alignment:
| Q |
132 |
acgtcccaaaaactcacgaatacggacatgttgaatgtttgaaagggtgtcaattcgagatttggtggaataaaggatttgttgtggtcaaaataaatga |
231 |
Q |
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| T |
3759665 |
acgtcccaaaaactcacgaaaacagatatgtttaatgttagaaagagtgtcaattccagatttggtggaataaattatttgttggggtcaaaataaatga |
3759566 |
T |
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| Q |
232 |
c---gcttgtctctcgtgaacatctcgcgatacaacaattcttgaggttaagcattactctatttttgttctttttgttcacatcacacttacaa |
323 |
Q |
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| T |
3759565 |
cacgtcttatctctcctgaacatctcgcaatacaac---------------gcattactctatttttgttctttttgttcacatcgcacttacaa |
3759486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 3759993 - 3759880
Alignment:
| Q |
23 |
agtccagagaatgatgtgccaatcggctcagcaagttaattcattggcactatgat-------atctgtgagattgattgtttcaaactacacttgttat |
115 |
Q |
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| T |
3759993 |
agtccagagaatcatgagccaatcggctcagcaagttaattcattggcactatgataaatgtaatttgtgagattgattgtttcaaactacac---ttat |
3759897 |
T |
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| Q |
116 |
tatagagccctcctata |
132 |
Q |
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| T |
3759896 |
tatagagccctactata |
3759880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 573
Target Start/End: Complemental strand, 48345611 - 48345489
Alignment:
| Q |
451 |
actaacacgagtagttccatacacaggtagctcctcacaatacctactatctccaaacacactcaaatgatccaactcaaaaagatcagaacttgcacaa |
550 |
Q |
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| T |
48345611 |
actaacatgagtagtctcaaacacaggtaaatcttcacaatacctatcatttcccatcacatccaagtgatcaagctcaaaaagatctgaacttgaacaa |
48345512 |
T |
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| Q |
551 |
cttgccacatcatcatcatcttc |
573 |
Q |
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| T |
48345511 |
cttgatacatcatcatcaacttc |
48345489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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