View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_low_3 (Length: 397)
Name: NF20490_low_3
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 29650160 - 29649792
Alignment:
| Q |
18 |
ctaacaaacataacacaaaagcacattgatcatataatgaaaatggcttcttcatttagtttcttaacactctttgtgttattttgtgtctacattccca |
117 |
Q |
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| T |
29650160 |
ctaacaaacataacacaaaagcacattgatcatataataaaaatggcttcttcatttagtttcttaacactctttgtgttattttgtgtctacattccca |
29650061 |
T |
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| Q |
118 |
taggaaccatgtctttctcaatgaaattaatcccacgagtaaactttgattcattgctctttcccaaaaacatttctcttgaagagaaacacaataaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29650060 |
taggaaccatgtctttctcaatgaaattaatcccacgagtaaactttgattcaattctctttcccaaaaacatttctcttgaagagaaacacaatagatt |
29649961 |
T |
|
| Q |
218 |
agtccaactctcaaaaattcatgctcttaagtatcaaatgaacaacaccaatgcaatatccccacaaacttttcaaccacttgtgccaactatttctaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29649960 |
agtccaactctcaaaaattcatgctcttaagtatcaaatgaacaacaccaatgcaatatccccacaaacttttcaaccacttgtcccaactatttctaac |
29649861 |
T |
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| Q |
318 |
atatatgctgttgaaatgaggattggcacaccaccattcacaactttgttgatgtttgacacaggttct |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29649860 |
atatatgctgttgaaatgaggattggcacaccaccattcacaactttgttgatgtttgacacaggttct |
29649792 |
T |
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