View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_low_6 (Length: 359)
Name: NF20490_low_6
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 35 - 346
Target Start/End: Complemental strand, 34084942 - 34084626
Alignment:
| Q |
35 |
aatgaatgaatgaaaggaggtgaagccttctctctctct----gtacatgatagtaaggaaaaagaaaagaaatcatccgatctgacacacacaggcaca |
130 |
Q |
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| T |
34084942 |
aatgaatgaatgaaagtaagtgaagccctctctctctctctctgtacatgatagtaaggaaaaagaaaagaaatcatccgatctgacacacacaggcaca |
34084843 |
T |
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| Q |
131 |
cacgctctcttcccttccttttcctttctccttctcattactataaacannnnnnn-gaaaacaatggcggttggaaactgtcttcactacctcaacaac |
229 |
Q |
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| T |
34084842 |
cacgctctcttcccttccttttcctttctccttctcattactataaacacccccccagaaaacaatggcggttggaaactgtcttcactacctcaacaac |
34084743 |
T |
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| Q |
230 |
gtagcataataataacagagtcaaacaatagtagtcgcaaaaagaccaaagtcatcgccgtcaccnnnnnnntactaattaccctttactgaacaaaaac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34084742 |
gtagcataataataacagagtcaaacaatagtagtcgcaaaaagaccaaagtcatcgccgtcaccaaaaaaatactaattaccctttactgaacaaaaac |
34084643 |
T |
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| Q |
330 |
ccgacccggttcttctc |
346 |
Q |
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||||||||||||||||| |
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| T |
34084642 |
ccgacccggttcttctc |
34084626 |
T |
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