View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20490_low_8 (Length: 340)
Name: NF20490_low_8
Description: NF20490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20490_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 47 - 322
Target Start/End: Complemental strand, 1823529 - 1823256
Alignment:
| Q |
47 |
ataagatcaagtgtaggtaacaaaactcatacaagcaatgggactatgctatcaaagctgaagatcaaaagacaaaacaatatatttctcttttaacaat |
146 |
Q |
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| T |
1823529 |
ataagctcaagtgttggtaacaaaactcatacaagtgatagggctacgccactagagctaaagatcaaaagacaaagcaatatatttcgcttttaacaat |
1823430 |
T |
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| Q |
147 |
gagaaggttaaa-gttttattttgtcgagaagatgatgagtcgcaacatgtttattttaaaaaattcgaaagtttctttcgtttcaaataatcaacacaa |
245 |
Q |
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| T |
1823429 |
gagaaggttaaaagttttattttgtcgagaagatgacgagtcacaatatgtttattttgaaaaattcgagagtttctttcgttctaaataatca-cacaa |
1823331 |
T |
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| Q |
246 |
tagctagccacacattggatgtaaactagactgaagtttctttaagtatcctcctaaattgtcaaattggagaactt |
322 |
Q |
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| T |
1823330 |
tagctagccaca--ttggatgtaaactagactgaagtttctttgagtatcctcctaaattgttaaattggagaactt |
1823256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 9014511 - 9014618
Alignment:
| Q |
145 |
atgagaaggttaaa-gttttattttgtcgagaagatgatgagtcgcaacatgtttattttaaaaaattcgaaagtttctttcgtttcaaataatcaacac |
243 |
Q |
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| T |
9014511 |
atgagaaggttaaaagttttactttctcgaacagatgatgagtagcaacctatttattctgaaaaatttgagaatttttttccttccaaataatccacac |
9014610 |
T |
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| Q |
244 |
aatagcta |
251 |
Q |
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| T |
9014611 |
agtagcta |
9014618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 1823603 - 1823561
Alignment:
| Q |
6 |
agcagcacagagggtgcttgaaatgagattaaagaattaagat |
48 |
Q |
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| T |
1823603 |
agcatcacaaagggtgcttgaaatgagattaaagaataaagat |
1823561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 8999530 - 8999473
Alignment:
| Q |
145 |
atgagaaggttaaa-gttttattttgtcgagaagatgatgagtcgcaacatgtttatt |
201 |
Q |
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| T |
8999530 |
atgagaaggttaaaagttttactttgtcgaacagatgatgagtagcaacctgtttatt |
8999473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 31712483 - 31712543
Alignment:
| Q |
64 |
taacaaaactcatacaagcaatgggactatgctatcaaagctgaagatcaaaagacaaaac |
124 |
Q |
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| T |
31712483 |
taacaaaactcatacaaacaattgggctatgccaccatagttgaagatcaaaagacaaaac |
31712543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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