View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_high_14 (Length: 221)
Name: NF20491_high_14
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 216470 - 216662
Alignment:
| Q |
11 |
catcatcaaagtggagaggatagataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctc |
110 |
Q |
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| T |
216470 |
catcatcaaagtggagaggatcgataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctc |
216569 |
T |
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| Q |
111 |
gaacacacaataatctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctgttgatgatgatttggc |
203 |
Q |
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| T |
216570 |
gaacacacaataatctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctgttgatgatgatttggc |
216662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 221421 - 221594
Alignment:
| Q |
14 |
catcaaagtggagaggatagataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaa |
113 |
Q |
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| T |
221421 |
catcaaagtagagaggatacataagttgttaatcgccatagtcagccgcacgaaacattgtgacttttagcaccaacggattattcttgatcagctcaaa |
221520 |
T |
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| Q |
114 |
cacacaataatctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctg |
187 |
Q |
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| T |
221521 |
cacacaataatctccatgtgacagattattgtccctttgaaatattgaaaatcccctcgttattttcattgctg |
221594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 144
Target Start/End: Original strand, 196601 - 196694
Alignment:
| Q |
51 |
atagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacacaataatctccatgagacagattgttg |
144 |
Q |
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| T |
196601 |
atagtcaaccgcacgaaacattgtgacttctagcacaaccggcttcttcttgatgagctcatacacacaataatctcgatgtgacagattgttg |
196694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 29837764 - 29837884
Alignment:
| Q |
50 |
aatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacacaataatctccatgagacagattgttgcccct |
149 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||| | | ||||||||||| ||||||||||||||||||| ||||| |||||| || | |
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| T |
29837764 |
aatagtcaatagcacgaaacattgtgacttttagcacaaccggttttgtcttgatcagctcaaacacacaataatctccatacgacaggttgttgtcctt |
29837863 |
T |
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| Q |
150 |
tagaaatataggaaatcccct |
170 |
Q |
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| T |
29837864 |
ttgaaatatagaaaatcccct |
29837884 |
T |
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