View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20491_high_5 (Length: 358)

Name: NF20491_high_5
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20491_high_5
NF20491_high_5
[»] chr1 (4 HSPs)
chr1 (15-214)||(42837128-42837327)
chr1 (28-150)||(35598628-35598750)
chr1 (29-115)||(35599218-35599305)
chr1 (290-340)||(42836983-42837033)
[»] chr4 (4 HSPs)
chr4 (51-218)||(11658109-11658275)
chr4 (51-218)||(50234362-50234528)
chr4 (290-332)||(11657982-11658024)
chr4 (290-330)||(50234245-50234285)
[»] chr2 (4 HSPs)
chr2 (51-218)||(7390568-7390736)
chr2 (51-218)||(19586376-19586544)
chr2 (290-332)||(7390821-7390863)
chr2 (290-332)||(19586249-19586291)
[»] scaffold1463 (2 HSPs)
scaffold1463 (51-218)||(87-253)
scaffold1463 (290-332)||(333-375)
[»] scaffold0368 (1 HSPs)
scaffold0368 (15-105)||(13480-13569)
[»] chr7 (1 HSPs)
chr7 (290-343)||(21316118-21316171)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 42837327 - 42837128
Alignment:
Q  15 ttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42837327 ttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt 42837228  T
Q  115 cnnnnnnncatcgttcgttgttgtatttcgtttctttctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttct 214  Q
    |       ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||| ||||||    
T  42837227 ctttttttcattgttagttgttgtatttcgtttctttctctgtgtttcagtctcaattcaataccttgcaatcatgccacttctctttttatgctcttct 42837128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 35598628 - 35598750
Alignment:
Q  28 tttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcg 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||       ||| |    
T  35598628 tttgacaatagggtttgaaaattgttgattttgatatgtgattgtgtgaaatatagctttttcttcattgttagattagtttttgttctttttttcattg 35598727  T
Q  128 ttcgttgttgtatttcgtttctt 150  Q
    || ||||||||||||||||||||    
T  35598728 ttagttgttgtatttcgtttctt 35598750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 35599218 - 35599305
Alignment:
Q  29 ttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattata-actttttcttcattgttagaatagtttttgttc 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||| |  ||||||||| ||||||||||||    
T  35599218 ttgacaatagggtttgaaaatcgttgattttgatatgtgattgtgtgaattatagtctttttttctattgttagattagtttttgttc 35599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 42837033 - 42836983
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatctgaagaga 340  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  42837033 gtaggttctaatgaaggtccacacagttatacttacttgaatctgaagaga 42836983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 11658275 - 11658109
Alignment:
Q  51 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 150  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||       ||| ||| ||| ||||| | |||| |||    
T  11658275 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttctttttttcattgttagtttttgtaat-cgttactt 11658177  T
Q  151 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 218  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  11658176 tctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 11658109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 50234528 - 50234362
Alignment:
Q  51 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 150  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||| ||| ||| |||||  | |||  ||    
T  50234528 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagtttttgttctttttttcattgttagtttttgta-atagttattt 50234430  T
Q  151 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 218  Q
    | |||||||||||||||||||||||||||||||||   ||| |||||| |||||||||||||||||||    
T  50234429 tatctgtgtttcagtctcaattcaataccttgcaaccatgctacttctctgtttatgttcttctactt 50234362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 11658024 - 11657982
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatc 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  11658024 gtaggttctaatgaaggtccacacagttatagttacttgaatc 11657982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 50234285 - 50234245
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaa 330  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  50234285 gtaggttctaatgaaggtccacgcagttatagttacttgaa 50234245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 7390568 - 7390736
Alignment:
Q  51 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt--cnnnnnnncatcgttcgttgttgtatttcgtttc 148  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||  |       ||| ||| ||| ||||| | |||| |    
T  7390568 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagttttttttttctttttttcattgttagtttttgtaat-cgttac 7390666  T
Q  149 tttctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 218  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  7390667 tttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 7390736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 19586544 - 19586376
Alignment:
Q  51 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgtt--cnnnnnnncatcgttcgttgttgtatttcgtttc 148  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |       ||| ||| |||  |||| | |||| |    
T  19586544 gttgattttgatatgtgattgtgtgaattacaactttttcttcattgttagaatagttttttttttctttttttcattgttagtttctgtaat-cgttac 19586446  T
Q  149 tttctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 218  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||    
T  19586445 tttctctgtgtttcagtctcaattcaataccttgcaatcatgctacttctttgtttatgttcttctactt 19586376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 7390821 - 7390863
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatc 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  7390821 gtaggttctaatgaaggtccacacagttatagttacttgaatc 7390863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 19586291 - 19586249
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatc 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  19586291 gtaggttctaatgaaggtccacacagttatagttacttgaatc 19586249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: scaffold1463
Description:

Target: scaffold1463; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 87 - 253
Alignment:
Q  51 gttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaatagtttttgttcnnnnnnncatcgttcgttgttgtatttcgtttctt 150  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||       ||| ||| ||| ||||   ||||| |||    
T  87 gttgattttgatatgtgattgtgtgaattacagctttttcttcattgttagaatagtttttgttctttttttcattgttagtttttgt-gatcgttactt 185  T
Q  151 tctctgtgtttcagtctcaattcaataccttgcaattgtgccacttctatgtttatgttcttctactt 218  Q
    ||||| |||||||||||||||| |||||||||||||  ||| | |||| |||||||||||||||||||    
T  186 tctctatgtttcagtctcaattgaataccttgcaatcatgctatttctctgtttatgttcttctactt 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1463; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 333 - 375
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatc 332  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  333 gtaggttctaatgaaggtccacacagttatagttacttgaatc 375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 13480 - 13569
Alignment:
Q  15 ttctaatttcgaatttgacattagggtttgaaaatcgttgattttgatatgtgattgtgtgaattataactttttcttcattgttagaata 105  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  13480 ttctaatttccaatttgacattagggtttgaaa-tcgttgattttgatatgtgattgtgtgaattatacttttttcttcattgttagaata 13569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 21316171 - 21316118
Alignment:
Q  290 gtaggttctcatgaaggtccacacagttatagttacttgaatctgaagagaaaa 343  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  21316171 gtaggttctaatgaaggtccacacagatatagttacttgaatctgaagagaaaa 21316118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University