View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_10 (Length: 335)
Name: NF20491_low_10
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 36140216 - 36139913
Alignment:
| Q |
16 |
atggtcattcatcgactttgcttcctagtatgttactgaaataaatgagtatttgatgtcaattatgtagttgatttacttattgatgataattctgatt |
115 |
Q |
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| T |
36140216 |
atggtcattcatcgactttgcttcctagtatgttactgaaataaatgagtatttgatgtcaattatgtagttgatttacttattgatgataattctgatt |
36140117 |
T |
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| Q |
116 |
ctctgaggtttaagtttcttgtgacaactctcctttatctgtaacaaatttaggtgggattattcaaattcaggataccttgatgcactaaaacacctca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36140116 |
ctctgaggtttaagtttcttgtgacaactctcctttatctgtaacaaatttaggtgggattattcaaattcaggataccttgatgcactaaaacacctca |
36140017 |
T |
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| Q |
216 |
cagacttgaaaggagaaggttagttttgttcctgattaactcatctaagtttccgtttctagatttaagcaaactgtttctgttaaccttgtacaggtaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36140016 |
cagacttgaaaggagaaggttagttttgttcctgattaactcatctaagttcccgtttctagatttaagcaaactgtttctgttaaccttgtacaggtaa |
36139917 |
T |
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| Q |
316 |
aatc |
319 |
Q |
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|||| |
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| T |
36139916 |
aatc |
36139913 |
T |
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