View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_11 (Length: 326)
Name: NF20491_low_11
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_11 |
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| [»] chr2 (6 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 16125158 - 16125028
Alignment:
| Q |
196 |
tgcagcagttgtaatggctatgcaaataaatataggtgtttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16125158 |
tgcagcagttgtaatggctatgcaaataaatataggtgcttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
16125059 |
T |
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| Q |
296 |
ggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16125058 |
ggtgatgatactcgtagaaaattcacaagcc |
16125028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 196 - 326
Target Start/End: Complemental strand, 16127311 - 16127181
Alignment:
| Q |
196 |
tgcagcagttgtaatggctatgcaaataaatataggtgtttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16127311 |
tgcagcagttgtaatggctatgcaaataaatataggtgcttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
16127212 |
T |
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| Q |
296 |
ggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16127211 |
ggtgatgatactcgtagaaaattcacaagcc |
16127181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 16334493 - 16334623
Alignment:
| Q |
196 |
tgcagcagttgtaatggctatgcaaataaatataggtgtttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
295 |
Q |
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| T |
16334493 |
tgcagcagttgtaatggctatgcaaataaatataggtgcttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgt |
16334592 |
T |
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| Q |
296 |
ggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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| T |
16334593 |
ggtgatgatactcgtagaaaattcacaagcc |
16334623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 16334345 - 16334494
Alignment:
| Q |
16 |
ctaacaacatagtttcatcttgctactgcatcataaacaggtaattaacctttgtcnnnnnnngccattttcctcctgcttcacgacgtg--nnnnnnnn |
113 |
Q |
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| T |
16334345 |
ctaacaacgtagtttcatcttgctactgcatcataaacaggtaattaacctttgtctttttttgccattttcctcctgcttcacgacgtgtttttttttt |
16334444 |
T |
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| Q |
114 |
cgcactctcttcttaacttatatctataatatattcattccttggttttg |
163 |
Q |
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| T |
16334445 |
cgcactctcttcttaacttatatttataatatattcattccttggttttg |
16334494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 16125307 - 16125157
Alignment:
| Q |
16 |
ctaacaacatagtttcatcttgctactgcatcataaacaggtaattaacctttgtcnnnnnnngccattttcctcctgcttcacgacgtg---nnnnnnn |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16125307 |
ctaacaacgtagtttcatcttgctactgcatcataaacaggtaattaacctttgtctttttttgccattttcctcctgcttcacgacgtgtttttttttt |
16125208 |
T |
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| Q |
113 |
ncgcactctcttcttaacttatatctataatatattcattccttggttttg |
163 |
Q |
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| T |
16125207 |
tcgcactctcttcttaacttatatttataatatattcattccttggttttg |
16125157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 16127394 - 16127310
Alignment:
| Q |
79 |
gccattttcctcctgcttcacgacgtgnnnnnnnncgcactctcttcttaacttatatctataatatattcattccttggttttg |
163 |
Q |
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| T |
16127394 |
gccattttcctcctgctttacaacgtgttttttttcgcactctcttcttaacttatatctataatatattcattccttggttttg |
16127310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 36017722 - 36017514
Alignment:
| Q |
116 |
cactctcttcttaacttatatctataatatattcattccttggttttgtttttctgaatgtaacattgtgattaatggggtgcagcagttgtaatggcta |
215 |
Q |
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||||||||||||||||||| |||| | ||||| || |||| |||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| |
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| T |
36017722 |
cactctcttcttaacttat--ctattttttattcctttcttgtttttgtttttctgaatgtaaagttgtcattaatgcagtgcatcagttgtaatggcta |
36017625 |
T |
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| Q |
216 |
tgcaaataaatataggtgtttcttcttcttctactttggaggtggcttcaaattcttttgatgtttttattagctttcgtggtgatgatactcgtagaaa |
315 |
Q |
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||||| ||| | |||||| ||||||||| ||| |||||||||||||||| || ||||||||||||||| |||| ||||||| ||||||||||| || |
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| T |
36017624 |
tgcaactaattctaggtgcttcttcttcatcttctttggaggtggcttcgaaaaaatttgatgtttttattgacttttgtggtgaggatactcgtagcaa |
36017525 |
T |
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| Q |
316 |
attcacaagcc |
326 |
Q |
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| T |
36017524 |
attcacaagcc |
36017514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 36025663 - 36025609
Alignment:
| Q |
272 |
tttgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |
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| T |
36025663 |
tttgatgtttttatcagctttcgtggtgaggatactcgtagaaacttcacaagcc |
36025609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 36034489 - 36034424
Alignment:
| Q |
261 |
cttcaaattcttttgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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|||| |||| ||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||| |
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| T |
36034489 |
cttcgaatttttttgatgtttttattaactttcatggtgaggatactcgtagcaaattcacaagcc |
36034424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 36004902 - 36004848
Alignment:
| Q |
272 |
tttgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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||||| ||||||||||||||| ||||||| |||||| ||||||| |||||||||| |
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| T |
36004902 |
tttgacgtttttattagcttttgtggtgaggatactggtagaaagttcacaagcc |
36004848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 23388582 - 23388534
Alignment:
| Q |
278 |
gtttttattagctttcgtggtgatgatactcgtagaaaattcacaagcc |
326 |
Q |
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|||||| |||||||||| |||||||||||||| ||||| ||||| |||| |
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| T |
23388582 |
gtttttcttagctttcgaggtgatgatactcgcagaaacttcacgagcc |
23388534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 12894532 - 12894582
Alignment:
| Q |
274 |
tgatgtttttattagctttcgtggtgatgatactcgtagaaaattcacaag |
324 |
Q |
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|||||||||||| |||||||| ||||| ||||||||||||| |||||||| |
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| T |
12894532 |
tgatgtttttataagctttcgcggtgaggatactcgtagaagcttcacaag |
12894582 |
T |
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