View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_14 (Length: 228)
Name: NF20491_low_14
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 7130204 - 7130400
Alignment:
| Q |
15 |
cagagaccggggtgctatagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcg |
114 |
Q |
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| T |
7130204 |
cagagaccggggtgctatagcttcctatagctttccagcaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcg |
7130303 |
T |
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| Q |
115 |
attgga-tatgcatctccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgt |
210 |
Q |
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| T |
7130304 |
attcgattatgcatctccacatgatggttgagtcgaaagacccgtaaggccaccagatttccatgaagccatagaaagcaatatatctctatatcgt |
7130400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 7117823 - 7118016
Alignment:
| Q |
18 |
agaccggggtgctatagcttcctatagctttccaacaataaacttgtttgcaagaaccatagaaaggtgcttaatccaatcgagcttaacatgctcgatt |
117 |
Q |
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| T |
7117823 |
agaccggggtgctatagcttcctatagctttccagcaataaacttgtttgcaagatccatagaaaggtgcttaatccaatcgagcttaacatgcttgatt |
7117922 |
T |
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| Q |
118 |
gga-tatgcatctccacatgatggttgagttgaaagacccgtaaggccactagatttccatgaagccatagaaagcaatatatctctatatcgt |
210 |
Q |
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| T |
7117923 |
ggattatgcatctccacatgatggttgagttgaaagacccgtaagaccaccagatttccatgaagccatagaaagcaatatatctctatatcgt |
7118016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 9789631 - 9789676
Alignment:
| Q |
28 |
gctatagcttcctatagctttccaacaataaacttgtttgcaagaa |
73 |
Q |
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| T |
9789631 |
gctatagcttcctataactttccagcagtaaacttgtttgcaagaa |
9789676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 26100777 - 26100733
Alignment:
| Q |
23 |
ggggtgctatagcttcctatagctttccaacaataaacttgtttg |
67 |
Q |
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| T |
26100777 |
ggggcgctatagcttcctataactttccaatgataaacttgtttg |
26100733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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