View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20491_low_17 (Length: 217)

Name: NF20491_low_17
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20491_low_17
NF20491_low_17
[»] chr8 (3 HSPs)
chr8 (18-200)||(10043325-10043507)
chr8 (71-147)||(1354832-1354908)
chr8 (70-147)||(1344654-1344731)
[»] chr3 (1 HSPs)
chr3 (70-147)||(24618716-24618793)
[»] chr1 (1 HSPs)
chr1 (70-145)||(29051821-29051896)
[»] chr7 (1 HSPs)
chr7 (73-119)||(13590862-13590908)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 10043507 - 10043325
Alignment:
Q  18 gtagaattgtgaagaaataataattgtgttaccgtctatattattatataagcactttgtttctgatcactgttatgttaatttctctaaggaccagatt 117  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043507 gtagaattgtgaataaataataattgtgttactgtctatattattatataagcactttgtttctgatcactgttatgttaatttctctaaggaccagatt 10043408  T
Q  118 gataaaataatgaaactgctttaaatttagtataaattgcttgctttcaatcctcgatttaggataactgtttggacggtaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10043407 gataaaataatgaaactgctttaaatttagtataaattgcttgctttcaatcctcgatttaggataactgtttggacggtaat 10043325  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 1354908 - 1354832
Alignment:
Q  71 actttgtttctgatcactgttatgttaatttctctaaggaccagattgataaaataatgaaactgctttaaatttag 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  1354908 actttgtttctgatcattgttatgttaatttctctaaggaccagattgatgaaatcatgaaactgctttaaatttag 1354832  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 1344654 - 1344731
Alignment:
Q  70 cactttgtttctgatcactgttatgttaatttctctaaggaccagattgataaaataatgaaactgctttaaatttag 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||  | ||   |||||||||||||||||||||    
T  1344654 cactttgtttctgatcattgttatgttaatttctctaaggaccagattagtgaaggcatgaaactgctttaaatttag 1344731  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 24618716 - 24618793
Alignment:
Q  70 cactttgtttctgatcactgttatgttaatttctctaaggaccagattgataaaataatgaaactgctttaaatttag 147  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||    
T  24618716 cactttgtttctgatcattgttatgttaatttctctaaggactagattgatgaaatcatgaaactgctttagatttag 24618793  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 29051896 - 29051821
Alignment:
Q  70 cactttgtttctgatcactgttatgttaatttctctaaggaccagattgataaaataatgaaactgctttaaattt 145  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||||    
T  29051896 cactttgtttctgatcattgttatgttaatttctctaaggaccagattgatgaaatcatgaaagtgctttagattt 29051821  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 13590862 - 13590908
Alignment:
Q  73 tttgtttctgatcactgttatgttaatttctctaaggaccagattga 119  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||    
T  13590862 tttgtttctgattattgttatgctaatttctctaaggaccagattga 13590908  T

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