View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_18 (Length: 216)
Name: NF20491_low_18
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 216479 - 216662
Alignment:
| Q |
15 |
agtggagaggatagataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacaca |
114 |
Q |
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| T |
216479 |
agtggagaggatcgataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacaca |
216578 |
T |
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| Q |
115 |
ataatctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctgttgatgatgatttggc |
198 |
Q |
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| T |
216579 |
ataatctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctgttgatgatgatttggc |
216662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 221431 - 221594
Alignment:
| Q |
19 |
gagaggatagataagttattaaacgtaatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacacaataa |
118 |
Q |
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| T |
221431 |
gagaggatacataagttgttaatcgccatagtcagccgcacgaaacattgtgacttttagcaccaacggattattcttgatcagctcaaacacacaataa |
221530 |
T |
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| Q |
119 |
tctccatgagacagattgttgccccttagaaatataggaaatccccttgatattatcattgctg |
182 |
Q |
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| T |
221531 |
tctccatgtgacagattattgtccctttgaaatattgaaaatcccctcgttattttcattgctg |
221594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 139
Target Start/End: Original strand, 196601 - 196694
Alignment:
| Q |
46 |
atagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacacaataatctccatgagacagattgttg |
139 |
Q |
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| T |
196601 |
atagtcaaccgcacgaaacattgtgacttctagcacaaccggcttcttcttgatgagctcatacacacaataatctcgatgtgacagattgttg |
196694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 29837764 - 29837884
Alignment:
| Q |
45 |
aatagtcaatcacacgaaacattgtgacttttagcacatccggcgtcttattgatcagctcgaacacacaataatctccatgagacagattgttgcccct |
144 |
Q |
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| T |
29837764 |
aatagtcaatagcacgaaacattgtgacttttagcacaaccggttttgtcttgatcagctcaaacacacaataatctccatacgacaggttgttgtcctt |
29837863 |
T |
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| Q |
145 |
tagaaatataggaaatcccct |
165 |
Q |
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| T |
29837864 |
ttgaaatatagaaaatcccct |
29837884 |
T |
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