View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_2 (Length: 497)
Name: NF20491_low_2
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_2 |
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| [»] scaffold0014 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Complemental strand, 6623336 - 6622856
Alignment:
| Q |
1 |
cttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatgaacttctcgaggagagtcta |
100 |
Q |
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| T |
6623336 |
cttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggaggggaattcatgaacttctcgaggagagtcta |
6623237 |
T |
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| Q |
101 |
gaattttggatgaaattcagtacttctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttgaagaaaact |
200 |
Q |
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| T |
6623236 |
gaattttggatgaaattcagtacttctttcactgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttcaagaaaact |
6623137 |
T |
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| Q |
201 |
ggaaattatcaataggaatatgattttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattg |
300 |
Q |
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| T |
6623136 |
ggaaattatcaatatgaatacgattttataaactcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattg |
6623037 |
T |
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| Q |
301 |
aaattcaagtgctgaaaattatgatttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaacatttggaga |
400 |
Q |
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| T |
6623036 |
atattcaagtgctgaaaattatgatttcaggttcagaagctttcaagcaaccaagttctaagcttgaaaatacggtttggaaatgtctaacatttggaga |
6622937 |
T |
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| Q |
401 |
agttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaac |
481 |
Q |
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| T |
6622936 |
agttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaac |
6622856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 142; Significance: 3e-74; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 133 - 351
Target Start/End: Original strand, 90415 - 90628
Alignment:
| Q |
133 |
tgagatacaaaaatatgtaaccactgcaaaagatttactaatttatgtatcaaaacttgaagaaaactggaaattatcaataggaatatgattttataaa |
232 |
Q |
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| T |
90415 |
tgagatacaaaaatatgtaaccactg-aaaagatttactaatttatgtatcaaaactt----aaaactggaaatcatccgaaggaatatgattttataaa |
90509 |
T |
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| Q |
233 |
ctcgtgttgtgcgttgctgaatgaagaacttcaacagcattgaaatccaagagaagacaacagtattgaaattcaagtgctgaaaattatgatttcaggt |
332 |
Q |
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| T |
90510 |
ctcgtgttgtgcattgctgaatgaagaacatcaacagcattgaaatccaagagaagacggcagtattgaaatccaagtgctgaaaacgatgatttcaggt |
90609 |
T |
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| Q |
333 |
tcagaagctttcaagcaac |
351 |
Q |
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| T |
90610 |
tcacaagctatcaagcaac |
90628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 90337 - 90417
Alignment:
| Q |
1 |
cttaagtgaaggacgatgactcttcagagacaagagttgcaattctgctgctgaagagaaattcaggatgggaattcatga |
81 |
Q |
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| T |
90337 |
cttaagtgaaggatgatgactcttcagagacaagagttgcagttctgctgttgaagagaaattccggatgggaattcatga |
90417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 90629 - 90713
Alignment:
| Q |
396 |
ggagaagttgctgtagtactacgctacttctgtgatgttttacactcctttcttcttctattagtaaaaactgggacagtaagaac |
481 |
Q |
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| T |
90629 |
ggagaagttgccacagtactacgctacttctgtgatgtttcacagtcctt-cttcttctattagtaaaaactggggcagtaagaac |
90713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 43 - 171
Target Start/End: Complemental strand, 28751910 - 28751782
Alignment:
| Q |
43 |
ttctgctgctgaagagaaattcaggatgggaattcatgaacttctcgaggagagtctagaattttggatgaaattcagtacttctttcactgagatacaa |
142 |
Q |
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|||||||| ||||||||| || ||||||| || | |||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||| |
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| T |
28751910 |
ttctgctgttgaagagaagtttcggatgggtatcgacgaacttctcgaggagaatctagaattctggatgaaattcagcacttctttcaccgagatacag |
28751811 |
T |
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| Q |
143 |
aaatatgtaaccactgcaaaagatttact |
171 |
Q |
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| T |
28751810 |
aaatacgaaacaactacaaaagatttact |
28751782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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