View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_3 (Length: 364)
Name: NF20491_low_3
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 41941954 - 41942300
Alignment:
| Q |
7 |
tagattattctcaagagatattcgccgcaccctcaactttttctactatttgttgtggtaataataaccaaaataatgtaaccaatgaggccacatcaaa |
106 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41941954 |
tagattattatcaagagatattcgctgcaccctcaactttttctactatttgttgtggtactaataaccaaaataatgtaaccaatgaggccacatcaaa |
41942053 |
T |
|
| Q |
107 |
tgatgaagggaataggagaacaaatcctctgattaaagacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcag |
206 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41942054 |
tgatgaagggaataggagaacaaatcctttgattaaacacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcag |
41942153 |
T |
|
| Q |
207 |
tatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41942154 |
tatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaa |
41942253 |
T |
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| Q |
307 |
acttaggtgtaggacctaggattattgagaaaacaaagaaaaaagtg |
353 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41942254 |
acttaggtgtaggacctaagattattgagaaaacaaagaaaaaagtg |
41942300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 153 - 353
Target Start/End: Original strand, 41947614 - 41947814
Alignment:
| Q |
153 |
gatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcctgctagattcaatgaggatttgt |
252 |
Q |
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|||||||||||||||||||||| | ||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947614 |
gatgaagtatttaaaaagttgctacaaaaaattgtagatccttgtttaggccaatatatctatgtttatgatcttcctgctagattcaatgaggatttgt |
41947713 |
T |
|
| Q |
253 |
tgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaaacttaggtgtaggacctaggattattgagaaaacaaagaaaaaagt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||| ||| |||| |
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| T |
41947714 |
tgaaaggatgccactctctacagaagtgggaaaatatgtgtgttttcttatcaaacttaggtgtaggacctaagattattgagaaatcaaaaaaagaagt |
41947813 |
T |
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| Q |
353 |
g |
353 |
Q |
| |
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| |
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| T |
41947814 |
g |
41947814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 22794148 - 22794296
Alignment:
| Q |
187 |
tggatccttgtttaggtcagtatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaa |
286 |
Q |
| |
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|||| ||||||||||| || ||||| ||||| |||||||||||| | |||||||||| || ||||||||||||||| || | || ||||||||||| |
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| T |
22794148 |
tggacccttgtttaggccaatatatatatgtctatgatcttcctagtcgattcaatgatgacttgttgaaaggatgcaacacactcattaagtgggaaaa |
22794247 |
T |
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| Q |
287 |
tatgtgtgtttacctatcaaacttaggtgtaggacctaggattattgag |
335 |
Q |
| |
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||||||| |||| ||||||||||||| |||| |||| |||||||||| |
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| T |
22794248 |
tatgtgtccttacttatcaaacttaggattagggcctaagattattgag |
22794296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 25247980 - 25247914
Alignment:
| Q |
136 |
tgattaaagacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttagg |
202 |
Q |
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||||||||||||||| |||||||||||||||||| |||| | |||| ||||||||||||| ||||| |
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| T |
25247980 |
tgattaaagacaatgacgatgaagtatttaaaaagatgccacaaaaagttatggatccttggttagg |
25247914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 25311764 - 25311698
Alignment:
| Q |
136 |
tgattaaagacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttagg |
202 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |||| | |||| ||||||||||||| ||||| |
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| T |
25311764 |
tgattaaagacaatgacgatgaagtatttaaaaagatgccacaaaaagttatggatccttggttagg |
25311698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 153 - 352
Target Start/End: Original strand, 1210368 - 1210567
Alignment:
| Q |
153 |
gatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcctgctagattcaatgaggatttgt |
252 |
Q |
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||||||||||||||||||||||| | ||||||| |||||||||||||| | || ||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
1210368 |
gatgaagtatttaaaaagttgccacaaaaaattgtggatccttgtttaagccaatatatctatatttatgatcttcctgctagattcaatgtggatttgt |
1210467 |
T |
|
| Q |
253 |
tgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaaacttaggtgtaggacctaggattattgagaaaacaaagaaaaaagt |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| | ||||||||||||| |||||||| |||| |
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| T |
1210468 |
tgaaaggatgccactctctacagaagtgggaaaatatgtgtgttttcttatcaaacttaggcgtaggacttgagattattgagaaatcaaagaaagaagt |
1210567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 136 - 353
Target Start/End: Complemental strand, 22536126 - 22535911
Alignment:
| Q |
136 |
tgattaaagacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcctgctag |
235 |
Q |
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|||||| |||||||| |||| |||||| |||||| |||| | |||||||||||||||||||||||| | | ||||||| |||||||||||||| ||| |
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| T |
22536126 |
tgattacagacaatgccgatgcagtattaaaaaagatgccac-aaaaattatggatccttgtttaggaaaatttatctatctttatgatcttcctactat |
22536028 |
T |
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| Q |
236 |
attcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaaacttaggtgtaggacctaggattattgag |
335 |
Q |
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||||||||| |||||||||| | ||||| ||||||||| |||||||||||||||||||||| | | |||||| ||||||||||| ||| | ||||||| |
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| T |
22536027 |
attcaatgatgatttgttgattg-atgccgctctctacaaaagtgggaaaatatgtgtgttttcttctcaaacataggtgtaggaactaagcttattgaa |
22535929 |
T |
|
| Q |
336 |
aaaacaaagaaaaaagtg |
353 |
Q |
| |
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||| |||||||| ||||| |
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| T |
22535928 |
aaatcaaagaaagaagtg |
22535911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 131 - 335
Target Start/End: Complemental strand, 54181051 - 54180847
Alignment:
| Q |
131 |
tcctctgattaaagacaatgttgatgaagtatttaaaaagttgccgccaaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcct |
230 |
Q |
| |
|
|||| ||||| |||| ||||| ||||||||||||| ||| || | |||| |||| | |||||||||||||| | ||||| || ||||||||||||||| |
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| T |
54181051 |
tcctttgattgaagagaatgtcgatgaagtatttacgaagctgtccccaacaattctcgatccttgtttaggccgatatatttacgtttatgatcttcct |
54180952 |
T |
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| Q |
231 |
gctagattcaatgaggatttgttgaaaggatgccactctctacagaagtgggaaaatatgtgtgtttacctatcaaacttaggtgtaggacctaggatta |
330 |
Q |
| |
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||| |||||| |||||||||||||| |||||||| |||| |||||||||| || ||||| ||||| |||||||||||||| ||||||||| ||||| |
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| T |
54180951 |
agtaggttcaataaggatttgttgaaaagatgccacactctcttgaagtgggaagatttgtgtctttacttatcaaacttaggtttaggacctaagatta |
54180852 |
T |
|
| Q |
331 |
ttgag |
335 |
Q |
| |
|
||||| |
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|
| T |
54180851 |
ttgag |
54180847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 16913788 - 16913693
Alignment:
| Q |
178 |
caaaaattatggatccttgtttaggtcagtatatctatgtttatgatcttcctgctagattcaatgaggatttgttgaaaggatgccactctctaca |
274 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
16913788 |
caaaaattatggatccttgtttaggcaaatatatctatgtttatgatgttcccgctagattcaatgatgatttgttgaaa-gatgcctctctctaca |
16913693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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