View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_4 (Length: 361)
Name: NF20491_low_4
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 345
Target Start/End: Original strand, 13483906 - 13484248
Alignment:
| Q |
7 |
acatcatcatcatcatccaaagtctaaacaatacatcttcagttcctataaatacaagagtgaactccactaataaatcacacaggcaaacaattaactt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13483906 |
acatcatcatcatcatccaaagtctaaacaatacatcttcagttcctataaatacaagagtgaactccactaataaatcacacaggcaaacaattaactt |
13484005 |
T |
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| Q |
107 |
attaatagtttgttatttcata----aattagaaatttataattcattatcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctc |
202 |
Q |
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| T |
13484006 |
attaatagtttgttatttcatacattaattagaaatttataattcattatcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctc |
13484105 |
T |
|
| Q |
203 |
ctgctagactttacaaagctctagttacagattctgataaccttatcccaaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtgg |
302 |
Q |
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| T |
13484106 |
ctgctagactttacaaagctctagttacagattctgataaccttatcccaaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtgg |
13484205 |
T |
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| Q |
303 |
cgccggaaccatcaaaaaacttactttcgttgaaggttagtat |
345 |
Q |
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| T |
13484206 |
cgccggaaccatcaaaaaacttactttcgttgaaggttagtat |
13484248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 25 - 340
Target Start/End: Original strand, 13489649 - 13489968
Alignment:
| Q |
25 |
aaagtctaaacaatacatcttcagttcctataaatacaagagtgaactccactaataaatcacacaggcaaacaattaacttattaatagtttgttattt |
124 |
Q |
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| T |
13489649 |
aaagtctaaactatacatcttcttttcctataaatacaagagtgaactccactaataaatcacacaggcaaacaattaacttcttaatagtttgttattt |
13489748 |
T |
|
| Q |
125 |
cata----aattagaaatttataattcattatcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaag |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13489749 |
catacattaattagaaatttataattcattatcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaag |
13489848 |
T |
|
| Q |
221 |
ctctagttacagattctgataaccttatcccaaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaa |
320 |
Q |
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| T |
13489849 |
ctttagttacagattctgataactttatcccgaatgttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaagaa |
13489948 |
T |
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| Q |
321 |
acttactttcgttgaaggtt |
340 |
Q |
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|||||||||||||||||||| |
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| T |
13489949 |
acttactttcgttgaaggtt |
13489968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 153 - 339
Target Start/End: Original strand, 13514733 - 13514919
Alignment:
| Q |
153 |
catcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatccca |
252 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514733 |
catcatgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatccca |
13514832 |
T |
|
| Q |
253 |
aaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggt |
339 |
Q |
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| T |
13514833 |
aaggttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggt |
13514919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 152 - 345
Target Start/End: Original strand, 13500762 - 13500955
Alignment:
| Q |
152 |
tcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatccc |
251 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||| ||| |||||||||| |||| |||| |||||||| | ||||||||| |||| ||||||||||| |
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| T |
13500762 |
tcatcatgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacacttcacaaagcttttgttacagatgctgacaaccttatccc |
13500861 |
T |
|
| Q |
252 |
aaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggttagtat |
345 |
Q |
| |
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|||||||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||| |
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| T |
13500862 |
aaaggttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagtat |
13500955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 152 - 339
Target Start/End: Original strand, 13508480 - 13508667
Alignment:
| Q |
152 |
tcatcatgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatccc |
251 |
Q |
| |
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|||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||| |||| | ||||| ||| |
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| T |
13508480 |
tcataatgggtgttttcaattttgaggatgaaaccacctctattgtagctcctgctacactttacaaagctcttgttacggatgctgacacccttacccc |
13508579 |
T |
|
| Q |
252 |
aaaggttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggt |
339 |
Q |
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| T |
13508580 |
aaaggttattgatgccatcaagagtattgatatcgttgaaggaaacggcggagccggaaccatcaagaaactcacttttgtcgaaggt |
13508667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 13508345 - 13508393
Alignment:
| Q |
28 |
gtctaaacaatacatcttcagttcctataaatacaagagtgaactccac |
76 |
Q |
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||||||||||||||||||||||| |||||||||| ||| | |||||||| |
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| T |
13508345 |
gtctaaacaatacatcttcagttactataaatactagactcaactccac |
13508393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13514618 - 13514654
Alignment:
| Q |
25 |
aaagtctaaacaatacatcttcagttcctataaatac |
61 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||| |
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| T |
13514618 |
aaagtctaaataatacaacttcagttcctataaatac |
13514654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 344
Target Start/End: Complemental strand, 10797690 - 10797502
Alignment:
| Q |
156 |
catgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatcccaaag |
255 |
Q |
| |
|
||||||||| |||| |||||| | |||||||| |||| || |||||||||| |||||||||||||| || || |||||| | | |||||||| |
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| T |
10797690 |
catgggtgtattcacatttgagcaagaaaccacctctacagttgctcctgctaagctttacaaagctcttgtccatgactctgatgatatcatcccaaaa |
10797591 |
T |
|
| Q |
256 |
gttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggttagta |
344 |
Q |
| |
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| | ||||||||||| | ||| |||||| || || ||||| ||||| ||||| |||||||| || || ||||||||||| |||||||| |
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| T |
10797590 |
gctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagta |
10797502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 344
Target Start/End: Complemental strand, 50079280 - 50079092
Alignment:
| Q |
156 |
catgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatcccaaag |
255 |
Q |
| |
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||||||||| |||| |||||| | |||||||| |||| || |||||||||| |||||||||||||| || || |||||| | | |||||||| |
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| T |
50079280 |
catgggtgtattcacatttgagcaagaaaccacctctacagttgctcctgctaagctttacaaagctcttgtccatgactctgatgatatcatcccaaaa |
50079181 |
T |
|
| Q |
256 |
gttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggttagta |
344 |
Q |
| |
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| | ||||||||||| | ||| |||||| || || ||||| ||||| ||||| |||||||| || || ||||||||||| |||||||| |
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| T |
50079180 |
gctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttgagggttagta |
50079092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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