View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_8 (Length: 350)
Name: NF20491_low_8
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 48236225 - 48235894
Alignment:
| Q |
1 |
tgtttacctttttccacttcttaaactttgactgccactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236225 |
tgtttacctttttccacttcttaaactttgactgccactcatctttttgttatgacaagaatatgtttacacaattatgacaatatactttttcctcctt |
48236126 |
T |
|
| Q |
101 |
acgtgcacaggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236125 |
acatgcacaggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatg |
48236026 |
T |
|
| Q |
201 |
gaaaacggtaccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236025 |
gaaaacggtaccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcac |
48235926 |
T |
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| Q |
301 |
ttcttttccttcaccaaacaaagccagagcca |
332 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
48235925 |
ttcttttccttcaccaaacaaagccagagcca |
48235894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 229
Target Start/End: Original strand, 3686383 - 3686503
Alignment:
| Q |
109 |
aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacgg |
208 |
Q |
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||||||||||| || ||| || |||||||| |||||||||||||||||||| ||||||| || || | |||||||| ||||| |||||||| || || |
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| T |
3686383 |
aggttgaggtattatgcaacataagacatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatgg |
3686482 |
T |
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| Q |
209 |
taccttagaagatagattatt |
229 |
Q |
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|| ||||||||| |||||||| |
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| T |
3686483 |
tagcttagaagacagattatt |
3686503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 3686530 - 3686602
Alignment:
| Q |
256 |
catggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccaga |
328 |
Q |
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|||||| |||| | ||| ||||||| ||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
3686530 |
catggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttccttcaccaaacaaaaccaga |
3686602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 6516733 - 6516777
Alignment:
| Q |
284 |
tgagattgcaactgcacttcttttccttcaccaaacaaagccaga |
328 |
Q |
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||||||||| |||| |||||||||||||||||| |||||||||| |
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| T |
6516733 |
tgagattgccactggccttcttttccttcaccaatcaaagccaga |
6516777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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