View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20491_low_9 (Length: 335)
Name: NF20491_low_9
Description: NF20491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20491_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 166 - 326
Target Start/End: Complemental strand, 15216485 - 15216325
Alignment:
| Q |
166 |
acaccgttaatttaactccannnnnnncaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttcatttgagtggttaaagagtcatggc |
265 |
Q |
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| T |
15216485 |
acaccgttaatttaaccccatttttttcaagtttaatcaattttaacgtgaaagcttggaagtttttaatatttaatttgagtggttaaatagtcatggc |
15216386 |
T |
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| Q |
266 |
cattcgttggtcccacgtatcctttgtgatcgcagtctgcagcttgcattattgttcatct |
326 |
Q |
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| T |
15216385 |
cattcgttggtcccacgtatcctttgtgatcgcagtctgcagcttgcattattgttcatct |
15216325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 15216631 - 15216553
Alignment:
| Q |
20 |
tgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca |
98 |
Q |
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| T |
15216631 |
tgctaacataaaaccgcaaaccgaaccgaaccacatggttgagtaaaaaaatgatccgaatacatccgaaccaaatgca |
15216553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 11219469 - 11219537
Alignment:
| Q |
29 |
aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgc |
97 |
Q |
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| T |
11219469 |
aaaaccgcaaaccgaaccaaaccatgtgattgagtaaaaaaatgatccgaatacatccgaaccaaatgc |
11219537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 25559601 - 25559532
Alignment:
| Q |
29 |
aaaaccgcaaaccgaaccgaaccacatggttgagtnnnnnnntgatccgaatacatccgaaccaaatgca |
98 |
Q |
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| T |
25559601 |
aaaaccacaaaccgaaccaaaccatacggttgagtaaaaaaatgatccgaatatatccgaaccaaatgca |
25559532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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