View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20492_high_5 (Length: 321)
Name: NF20492_high_5
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20492_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 24709912 - 24709609
Alignment:
| Q |
1 |
agcagtagtcccaatttgcatttccctttcaaattcgaatcagattctttgacataaattgatttcgataaccataaattagttcagaaactactgaaat |
100 |
Q |
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| T |
24709912 |
agcagtagtcccaatttgcatttccctttcaaattcgaatcagattctttgacataaattgatttcgataaccataaattaattcagaaactactgaaat |
24709813 |
T |
|
| Q |
101 |
caagaatgattgaaaatcttttaaaacagaaaatagtgaaataaagctctggcgccacttaagcattgtgcgcaaatactcgacgatacaacaagtcctt |
200 |
Q |
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| T |
24709812 |
caagagtgattgaaaatctttaaaaacagaaaatagtgaaataaagctcaggcgccacttaagcattgtgcgcaaatactcgacgatacaacaagtcctt |
24709713 |
T |
|
| Q |
201 |
caaagtgttggaggtgacataatcgtcaaaataaaatagaaaaagataaaggataagagttttttagttttacacgttcttctcatacaagtcaggttca |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24709712 |
caaagtgttggaggtgacacaatcgtcaaaataaaatagaaaaagataaaggataagagttttttagttttacacgttcttctcatacaagtcaggttca |
24709613 |
T |
|
| Q |
301 |
acta |
304 |
Q |
| |
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|||| |
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| T |
24709612 |
acta |
24709609 |
T |
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