View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20492_high_7 (Length: 304)

Name: NF20492_high_7
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20492_high_7
NF20492_high_7
[»] chr5 (1 HSPs)
chr5 (5-299)||(43366624-43366915)


Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 43366915 - 43366624
Alignment:
Q  5 cgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcctt 104  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366915 cgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcctt 43366816  T
Q  105 ctacttcaattacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcag 204  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43366815 ctacttcaattacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcag 43366716  T
Q  205 caatccccatttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccctttgcttct 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||| |||| ||||    
T  43366715 caatccccatttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttct 43366624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University