View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20492_low_1 (Length: 706)

Name: NF20492_low_1
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20492_low_1
NF20492_low_1
[»] chr5 (7 HSPs)
chr5 (1-339)||(35256822-35257161)
chr5 (381-690)||(35257158-35257467)
chr5 (506-605)||(10373577-10373676)
chr5 (554-588)||(27837131-27837165)
chr5 (557-604)||(5202793-5202840)
chr5 (557-586)||(42731654-42731683)
chr5 (556-596)||(19256965-19257005)
[»] chr1 (5 HSPs)
chr1 (542-592)||(15252194-15252244)
chr1 (556-606)||(42947855-42947905)
chr1 (556-606)||(45394550-45394600)
chr1 (557-595)||(51920931-51920969)
chr1 (542-607)||(12387869-12387934)
[»] chr3 (3 HSPs)
chr3 (556-595)||(1550450-1550489)
chr3 (506-575)||(39432802-39432871)
chr3 (514-586)||(33884658-33884730)
[»] chr8 (3 HSPs)
chr8 (557-607)||(11633082-11633132)
chr8 (556-620)||(26273997-26274061)
chr8 (556-605)||(42196139-42196188)
[»] chr7 (3 HSPs)
chr7 (560-605)||(22787830-22787875)
chr7 (545-595)||(40078663-40078713)
chr7 (545-586)||(36089747-36089788)
[»] chr2 (1 HSPs)
chr2 (556-596)||(26979545-26979585)
[»] chr4 (2 HSPs)
chr4 (564-593)||(28242044-28242073)
chr4 (557-593)||(34148821-34148857)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 35256822 - 35257161
Alignment:
Q  1 cctttgttgttgctttggactgtatttggagagctaggaacaaaaacatttttgagaattgtcctcataattttgaagatatttgccaggacattaaaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35256822 cctttgttgttgctttggactgtatttggagagctaggaacaaaaacatttttgagaattgtcctcataattttgaagatatctgccaggacattaaaac 35256921  T
Q  101 cagaagcaatgaactgatccaggtatacaatctgcagcaaacagttcagtctgatactgattttaacacttcagtcagtggaattggttggcaaaggcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35256922 cagaagcaatgaactgatccaggtatacaatctgcagcaaacagttcagtctgatactgattttaacacttcagtcagtggaattggttggcaaaggcga 35257021  T
Q  201 gtacattcttggttttgcgagaaacatctgtcatcatggcataattttctgcagtattctacggtttaaaattcctgaaaccgattcgatggaggttttg 300  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  35257022 gtacattcttggttttgcgagaaacatctgtcatcatggcagaattttctgcagtattctacggtttaaaattcctgaaaccgattcgatggaggctttg 35257121  T
Q  301 agtattatgcaaaccaggtgtgtcc-aatcattcatgttg 339  Q
    |||||||||||| |||||||||||| |||||| |||||||    
T  35257122 agtattatgcaagccaggtgtgtccaaatcatccatgttg 35257161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 381 - 690
Target Start/End: Original strand, 35257158 - 35257467
Alignment:
Q  381 gttgcgtggcggggaatcatgtcctttgggaagtgaatcaagcagcagatgccttcgccaaggcgggattgaatcagttgatgcaaatgcacattttaat 480  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  35257158 gttgcgtggcggggaatcatgtccttcgggaagtgaatcaagcagcggatgcctttgccaaggagggattgaatcagtcgatgcaaatgcacattttaat 35257257  T
Q  481 caatcttcctactttttgctatagagagtaattagtaaagtgagaaaatcacttattaatgttttaaccactcacgatttgttatgcatgtgcatataat 580  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35257258 caatcttcctactttttgctatagagagtaattagtaaagtgaggaaatcacttattaatgttttaaccactcacgatttgttatgcatgtgcatataat 35257357  T
Q  581 atcaactattgatttggttatcaacgactggtatttctcgctagtgaattgctctctttagaggagcattatccatttatatataaccatatacaactgt 680  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35257358 atcaactattgatttggttatcaacgactggtatttctcccgagtgaattgctctctttagaggagcattatccatttatatataaccatatacaactgt 35257457  T
Q  681 accatgaatc 690  Q
    ||||||||||    
T  35257458 accatgaatc 35257467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 605
Target Start/End: Complemental strand, 10373676 - 10373577
Alignment:
Q  506 gagtaattagtaaagtgagaaaatcacttattaatgttttaaccactcacgatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 605  Q
    ||||| |||||||||| ||||||| | |  || || || |||||| ||| |||||| ||| |||||| ||||||||||||| ||||||||| ||||||||    
T  10373676 gagtagttagtaaagtaagaaaataaatggttgatattgtaaccattcatgatttggtattcatgtgtatataatatcaaccattgatttgtttatcaac 10373577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 554 - 588
Target Start/End: Original strand, 27837131 - 27837165
Alignment:
Q  554 acgatttgttatgcatgtgcatataatatcaacta 588  Q
    |||||||||||||||||||||||||||||||||||    
T  27837131 acgatttgttatgcatgtgcatataatatcaacta 27837165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 604
Target Start/End: Original strand, 5202793 - 5202840
Alignment:
Q  557 atttgttatgcatgtgcatataatatcaactattgatttggttatcaa 604  Q
    ||||||||| |||||||||||||||| | ||||||||||| |||||||    
T  5202793 atttgttatacatgtgcatataatatgatctattgatttgtttatcaa 5202840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 586
Target Start/End: Original strand, 42731654 - 42731683
Alignment:
Q  557 atttgttatgcatgtgcatataatatcaac 586  Q
    ||||||||||||||||||||||||||||||    
T  42731654 atttgttatgcatgtgcatataatatcaac 42731683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 556 - 596
Target Start/End: Original strand, 19256965 - 19257005
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttg 596  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  19256965 gatttgttatgcaggtacatataatatcaaccattgatttg 19257005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 542 - 592
Target Start/End: Complemental strand, 15252244 - 15252194
Alignment:
Q  542 ttttaaccactcacgatttgttatgcatgtgcatataatatcaactattga 592  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  15252244 ttttaatcacccacgatttgttatgcatgtccatataatatcaactattga 15252194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 606
Target Start/End: Original strand, 42947855 - 42947905
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaacg 606  Q
    |||||||| | ||| |||||||||||||||| ||||||||| |||||||||    
T  42947855 gatttgttttacatttgcatataatatcaaccattgatttgtttatcaacg 42947905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 45394600 - 45394550
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaacg 606  Q
    |||||||| ||||||||||||||||||||||| || ||||| | |||||||    
T  45394600 gatttgttctgcatgtgcatataatatcaactgttaatttgttcatcaacg 45394550  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 595
Target Start/End: Complemental strand, 51920969 - 51920931
Alignment:
Q  557 atttgttatgcatgtgcatataatatcaactattgattt 595  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  51920969 atttgttatacatgtgcatataatattaactattgattt 51920931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 542 - 607
Target Start/End: Complemental strand, 12387934 - 12387869
Alignment:
Q  542 ttttaaccactcacgatttgttatgcatgtgcatataatatcaactattgatttggttatcaacga 607  Q
    ||||||||| |||  |||| || |||||||||||||||||| |||  |||||||| ||||||||||    
T  12387934 ttttaaccattcagaatttattttgcatgtgcatataatataaaccgttgatttgtttatcaacga 12387869  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 556 - 595
Target Start/End: Original strand, 1550450 - 1550489
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgattt 595  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1550450 gatttgttatgcatgtgcatataatatcaaccattgattt 1550489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 575
Target Start/End: Complemental strand, 39432871 - 39432802
Alignment:
Q  506 gagtaattagtaaagtgagaaaatcacttattaatgttttaaccactcacgatttgttatgcatgtgcat 575  Q
    ||||||| |||||||||||||||||| |  || || |||||||||| || ||||| | ||||||||||||    
T  39432871 gagtaatcagtaaagtgagaaaatcaatggttgatattttaaccacccatgatttatcatgcatgtgcat 39432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 586
Target Start/End: Complemental strand, 33884730 - 33884658
Alignment:
Q  514 agtaaagtgagaaaatcacttattaatgttttaaccactcacgatttgttatgcatgtgcatataatatcaac 586  Q
    |||||||||||||||||| |  || || || |||||||  ||||||| |||||||||| |||||| |||||||    
T  33884730 agtaaagtgagaaaatcagtggttgatattataaccacctacgatttattatgcatgtacatatattatcaac 33884658  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 557 - 607
Target Start/End: Original strand, 11633082 - 11633132
Alignment:
Q  557 atttgttatgcatgtgcatataatatcaactattgatttggttatcaacga 607  Q
    ||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  11633082 atttgttatgcatgtacatataatatcaaccattgatttgttcatcaacga 11633132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 620
Target Start/End: Complemental strand, 26274061 - 26273997
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaacgactggtatttctcg 620  Q
    ||||||||||||||| ||||||||||| ||| |||| |||| |||||||||  ||||||| ||||    
T  26274061 gatttgttatgcatgcgcatataatattaaccattggtttgtttatcaacggttggtattactcg 26273997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 605
Target Start/End: Original strand, 42196139 - 42196188
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttggttatcaac 605  Q
    ||||||||||||||||| ||||||||||||| ||| ||||| ||| ||||    
T  42196139 gatttgttatgcatgtgaatataatatcaacaattaatttgtttaccaac 42196188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 605
Target Start/End: Original strand, 22787830 - 22787875
Alignment:
Q  560 tgttatgcatgtgcatataatatcaactattgatttggttatcaac 605  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||    
T  22787830 tgttatgtatgtgcatataatatcaactattgattcgtttatcaac 22787875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 595
Target Start/End: Complemental strand, 40078713 - 40078663
Alignment:
Q  545 taaccactcacgatttgttatgcatgtgcatataatatcaactattgattt 595  Q
    ||||||| || ||||||||||| ||||| ||||||||||||| ||||||||    
T  40078713 taaccacacatgatttgttatgtatgtgtatataatatcaaccattgattt 40078663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 586
Target Start/End: Original strand, 36089747 - 36089788
Alignment:
Q  545 taaccactcacgatttgttatgcatgtgcatataatatcaac 586  Q
    |||||||||| |||||||||||||||| || |||||||||||    
T  36089747 taaccactcatgatttgttatgcatgtacagataatatcaac 36089788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 596
Target Start/End: Original strand, 26979545 - 26979585
Alignment:
Q  556 gatttgttatgcatgtgcatataatatcaactattgatttg 596  Q
    |||||||||||||||| |||||||||||||| |||||||||    
T  26979545 gatttgttatgcatgtacatataatatcaaccattgatttg 26979585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 593
Target Start/End: Complemental strand, 28242073 - 28242044
Alignment:
Q  564 atgcatgtgcatataatatcaactattgat 593  Q
    ||||||||||||||||||||||||||||||    
T  28242073 atgcatgtgcatataatatcaactattgat 28242044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 557 - 593
Target Start/End: Complemental strand, 34148857 - 34148821
Alignment:
Q  557 atttgttatgcatgtgcatataatatcaactattgat 593  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  34148857 atttgttattcatgtgcatataatatcaaccattgat 34148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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