View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20492_low_11 (Length: 230)
Name: NF20492_low_11
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20492_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32174586 - 32174802
Alignment:
| Q |
1 |
acctgttgacattatcaacaaacgttaatttcttggctaaattatgactatagttaaatgtatctacactagaatcatgtacgctcatatacttctaaat |
100 |
Q |
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| T |
32174586 |
acctgttgacattatcaacaaacgttaatttcttggctaaattatgactatagttaaatgtatctacactagaatcatgtacgctcatatacttctaaat |
32174685 |
T |
|
| Q |
101 |
cttttcttgttcttatgcatcccaatgatattttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttattgtatccatt |
200 |
Q |
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| T |
32174686 |
cttttcttgttcttatgcatcccaatgatattttagtatgaatgaaacccaaagattaatgatatatttgaagaaaaatatataccttattgtatccatt |
32174785 |
T |
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| Q |
201 |
atcaaccacgtctttat |
217 |
Q |
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||||||||||||||||| |
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| T |
32174786 |
atcaaccacgtctttat |
32174802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 215
Target Start/End: Original strand, 32182707 - 32182839
Alignment:
| Q |
83 |
gctcatatacttctaaatcttttcttgttcttatgcatcccaatgatattttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatata |
182 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |
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| T |
32182707 |
gctcatatacttctaaatcttttctagtttttatgcatcccaatgacattttagtatgaatgaaactcaaatattaatggtatatttgaagaaaaatata |
32182806 |
T |
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| Q |
183 |
taccttattgtatccattatcaaccacgtcttt |
215 |
Q |
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| T |
32182807 |
taccttattgtctccattattaacaacttcttt |
32182839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 206
Target Start/End: Original strand, 32156933 - 32157114
Alignment:
| Q |
27 |
aatttcttggctaaattatgactatagttaaatgtatctacactagaatcatgtacgctcatatacttctaaatcttttcttgttcttatgcatcccaat |
126 |
Q |
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| T |
32156933 |
aatttgttggctaaattatgactgtagttaaatatatctaagctagattcatgtagggttgaattatttttaatatcttctagtt-ttatgcatctgtgt |
32157031 |
T |
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| Q |
127 |
gatattttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatatacctt---attgtatccattatcaac |
206 |
Q |
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| T |
32157032 |
gacattttagtacgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcattgtctccattatcaac |
32157114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 32206057 - 32206022
Alignment:
| Q |
182 |
ataccttattgtatccattatcaaccacgtctttat |
217 |
Q |
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| T |
32206057 |
ataccttattgtatccattatcaaccacgtctttat |
32206022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 32211808 - 32211760
Alignment:
| Q |
158 |
aatgatatatttgaagaatgatatataccttattgtatccattatcaac |
206 |
Q |
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|
| T |
32211808 |
aatgatatatttaaagaaaaatacataccttattgtatccattatcaac |
32211760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 32119073 - 32119143
Alignment:
| Q |
131 |
ttttagtatgaatgaaacccaaatattaatgatatatttgaagaatgatatataccttattgtatccatta |
201 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||||||| || || |||||||||||| ||||||| |
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| T |
32119073 |
ttttagtatgaatgaaactcaaagatgaatgatatatttgacgagaaatgcataccttattgtctccatta |
32119143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 32182672 - 32182702
Alignment:
| Q |
1 |
acctgttgacattatcaacaaacgttaattt |
31 |
Q |
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| T |
32182672 |
acctgttgacattatcaacaaacgttaattt |
32182702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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