View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20492_low_3 (Length: 495)
Name: NF20492_low_3
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20492_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 37662222 - 37662691
Alignment:
| Q |
19 |
ttctaatgtatcacactttcactaccaaactcaccatgcaacaactcttaaacaagtcacaaggaacttgcgaaacaaccctttttcgccaaaagaatgc |
118 |
Q |
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| T |
37662222 |
ttctaatgtatcacactttcactaccaaactcaccatgcaacaactcttaaacaagtcacaaggaacttgcgaaacaaccctttttcgccaaaagaatgc |
37662321 |
T |
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| Q |
119 |
atcactcactaaggttgatactttgcaaaaaacagttgagatcaaccatgttttgatatcaaaccctgatatgtttcttggtgaagaattcaacattcat |
218 |
Q |
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| T |
37662322 |
atcactcactaaggttgatactttgcaaaaaacagttgagatcaaccatgttttgatatcaaaccctgatatgtttcttggtgaagaattcaacattcat |
37662421 |
T |
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| Q |
219 |
ggtgttcttggacctttttcttctttgcaacgtgaagttttacaaggtggttctgatttcattcgttcaccaacttgtccttcattcaagacaaattcaa |
318 |
Q |
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| T |
37662422 |
ggtgttcttggacctttttcttctttgcaacgtgaagttttacaaggtggttctgatttcattcgttcaccaacttgtccttcattcaaaaccaattcaa |
37662521 |
T |
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| Q |
319 |
catatgaagttggtgatttcaagaactttgttgaatggaacaaggttgttcagttacttggttcaaaagggtattcttcattttcaactgcattgcattc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37662522 |
catatgaagttggtgatttcaagaactttgttgaatggaacaaggttgttcagttacttggttcaaaagggtattcttcattttcaactgcattgcattc |
37662621 |
T |
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| Q |
419 |
tgttcttgaagggattctgaaagattcatcaagttttggttatggttctgctacaatctctgctcctcct |
488 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37662622 |
tgttctcgaagggattctgaaagattcatcaagttttggttatggttctgctacaatctttgctcctcct |
37662691 |
T |
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