View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20492_low_4 (Length: 381)
Name: NF20492_low_4
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20492_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 38052371 - 38052021
Alignment:
| Q |
14 |
aatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38052371 |
aatatcataatcactaggttgtatgctttttaatataattaaatcccaatttaaagagcaccaaaacatcaacttacagagatttaaacaatttgttatg |
38052272 |
T |
|
| Q |
114 |
gtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttgttgaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38052271 |
gtttgtattttagtttcagactctatcaaaaagtttgatggaactatgtttaaaatccggcagttttggagatactttttagagaaagattttgttgaac |
38052172 |
T |
|
| Q |
214 |
cnnnnnnngaagaaaatttcaagagtttgaagtttagggcaattctggagcaatataatagaagtttagttttagttttgtaatatgaattgattttttc |
313 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38052171 |
caaaaaaagaagaaaatttcaagagtttgaagtttagggcaattctagagcaatataatagaagtttagttttagttttgtaatatgaattgatttcttc |
38052072 |
T |
|
| Q |
314 |
atcgagaagactcttctccatctacaacggacaataagaagatacatactt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38052071 |
atcgagaagactcttctccatctacaacgaacaataagaagatacatactt |
38052021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 40254061 - 40254122
Alignment:
| Q |
144 |
aagtttgatggaactatgtttaaaatccggcggttttggagatactttttagagaaaggttttg |
207 |
Q |
| |
|
||||||||| ||||||||||||||| || | |||| |||||||| ||||||||||| |||||| |
|
|
| T |
40254061 |
aagtttgatcgaactatgtttaaaacccagtggttatggagata--ttttagagaaaagttttg |
40254122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University