View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20492_low_9 (Length: 295)
Name: NF20492_low_9
Description: NF20492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20492_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2691343 - 2691605
Alignment:
| Q |
1 |
tatcacctttacttaatggcattgctgaaaggtttcattgggataaaattatggaaggtgacaacgtcataggactcaaaactgtaagaccttgtctata |
100 |
Q |
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| T |
2691343 |
tatcacctttacttaatggcattgctgaaaggtttcattgggataaaattatggaaggtgacaacgtcataggactcaaaactgtaagaccttgtctata |
2691442 |
T |
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| Q |
101 |
atcatttgatattaattaatttcttcttatgaaaatttatgtcttagtttaatttcaacaattatttgaaatttgtttgagacatatatttatatgtgaa |
200 |
Q |
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| T |
2691443 |
ttcatttgatattaattaatttcttcttatgaaaatttatgtcttagtttaatttcaacaattatttgaaatttgtttgagacatatatttatatgtgaa |
2691542 |
T |
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| Q |
201 |
aaattgtacctaggggaagcaaagcatatcattggagcctggtggacaaattgagcttagtgg |
263 |
Q |
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| T |
2691543 |
aaattgtacctaggggaagcaaagcatatcattggagcctggtggacaaattgagcttagtgg |
2691605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2673154 - 2673242
Alignment:
| Q |
1 |
tatcacctttacttaatggcattgctgaaaggtttcattgggataaaattatggaaggtgacaacgtcataggactcaaaactgtaaga |
89 |
Q |
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| T |
2673154 |
tatcagctctactcaatggcattgctgcgaggtttgattgggataaaattatggaaggtgacaatatcatgggactcaaaaccgtaaga |
2673242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 252
Target Start/End: Original strand, 655753 - 655787
Alignment:
| Q |
218 |
agcaaagcatatcattggagcctggtggacaaatt |
252 |
Q |
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| T |
655753 |
agcaaaggatatcattggagcctggtggacaaatt |
655787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 40927097 - 40927032
Alignment:
| Q |
15 |
aatggcattgctgaaaggtttcattgggataaaattatggaaggtgacaacgtcataggactcaaa |
80 |
Q |
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||||||||||||||||| ||| | ||||||||| | ||||||||||| ||| | || ||||||||| |
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| T |
40927097 |
aatggcattgctgaaagatttgactgggataaagtaatggaaggtgataacattattggactcaaa |
40927032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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