View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20493_high_1 (Length: 281)
Name: NF20493_high_1
Description: NF20493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20493_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 39173804 - 39173605
Alignment:
| Q |
67 |
caaaagtattaggaagaaaagatatcagcttcactatattgattatgagatatattggtctagatctagtgttgaatttgtaagttttcgatggttatac |
166 |
Q |
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| T |
39173804 |
caaaagtattaggaagaaaagatatcagcttcactatattgattatgagatatattggtctagatctagtgttgaatttgtaagttttcgatggttatac |
39173705 |
T |
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| Q |
167 |
tttgttgttttatgataaaactgatgatgtttcctttagcctctttgcaaaccttggaagatttgtacacgggaagttccttgtaagtgaggtcatatct |
266 |
Q |
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| T |
39173704 |
ttctttgttttatgataaaactgatgatgtttcctttagcctctttgcgaaccttggaagatttgtacacgggaagttccttgtaagtgaagtcatatct |
39173605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 67 - 266
Target Start/End: Complemental strand, 39169860 - 39169661
Alignment:
| Q |
67 |
caaaagtattaggaagaaaagatatcagcttcactatattgattatgagatatattggtctagatctagtgttgaatttgtaagttttcgatggttatac |
166 |
Q |
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| T |
39169860 |
caaaagtattgggagacaaagatatcagcttcactatattgattatgagacatattggtctagatctagtgttgaatttgtacgttttcgatggttatac |
39169761 |
T |
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| Q |
167 |
tttgttgttttatgataaaactgatgatgtttcctttagcctctttgcaaaccttggaagatttgtacacgggaagttccttgtaagtgaggtcatatct |
266 |
Q |
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| T |
39169760 |
ttctttgttttatgataaaactgatgatgtttcctttagcctctttgcaaaccttggaagatttgtacacgggaggttccttgtagttgaggtcatatct |
39169661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 39173831 - 39173789
Alignment:
| Q |
8 |
aacattttcatgatcgatcagcaataacaaaagtattaggaag |
50 |
Q |
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| T |
39173831 |
aacattttcatgatcgatcaacaataacaaaagtattaggaag |
39173789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 39178808 - 39178758
Alignment:
| Q |
216 |
aaccttggaagatttgtacacgggaagttccttgtaagtgaggtcatatct |
266 |
Q |
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| T |
39178808 |
aaccttggaagatttgtacatgggaggttccttgtacgtgaggacatatct |
39178758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 39179136 - 39179094
Alignment:
| Q |
8 |
aacattttcatgatcgatcagcaataacaaaagtattaggaag |
50 |
Q |
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| T |
39179136 |
aacattttcatgatcaatcaacaataccaaaagtattaggaag |
39179094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Complemental strand, 39179109 - 39179068
Alignment:
| Q |
67 |
caaaagtattaggaagaaaagatatcagcttcactatattga |
108 |
Q |
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| T |
39179109 |
caaaagtattaggaagcaaagaaatcagcttcactacattga |
39179068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 39169887 - 39169851
Alignment:
| Q |
8 |
aacattttcatgatcgatcagcaataacaaaagtatt |
44 |
Q |
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| T |
39169887 |
aacattttcatgatcaatcaacaataacaaaagtatt |
39169851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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