View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20493_low_1 (Length: 435)
Name: NF20493_low_1
Description: NF20493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20493_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 54081010 - 54081371
Alignment:
| Q |
19 |
tacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatc |
118 |
Q |
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| T |
54081010 |
tacctttgcttgatttgctacttcaagctgctacattaatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcaattattgaatc |
54081109 |
T |
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| Q |
119 |
agaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggc |
218 |
Q |
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| T |
54081110 |
agaaagcagagtggctaggaaggatttgggtttggaccttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggc |
54081209 |
T |
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| Q |
219 |
tctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctcttcgtcttctagttctgggtctggttccggggcag |
318 |
Q |
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| T |
54081210 |
tctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctcttcgtcttctagttctgggtctggttccggggcag |
54081309 |
T |
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| Q |
319 |
ggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
380 |
Q |
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| T |
54081310 |
ggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
54081371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 56 - 247
Target Start/End: Original strand, 54084426 - 54084617
Alignment:
| Q |
56 |
aatggctgcaccttggtcgtgttgtttacttgcactgcttgttttggtgtcgattattgaatcagaaagcagagtggctaggaaggatttgggtttggac |
155 |
Q |
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| T |
54084426 |
aatggctgcaccttggtcatgttgtttacttgcggtgctcgttttgatgtcagttattgaatcagaaagcagagtagcaaggaaggatttgggtttggac |
54084525 |
T |
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| Q |
156 |
cttggtggattgggaattggacttggtgcaggagttggtttaggaattggaggtggcagtggctctggagccggagctggtgcaggctctgg |
247 |
Q |
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| T |
54084526 |
ctcggtgggttgggaattggacttggtgcaggagtaggcttgggaattggaggtggcagtggctctggagccggagcaggagctggctctgg |
54084617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 215 - 380
Target Start/End: Original strand, 54084609 - 54084774
Alignment:
| Q |
215 |
tggctctggagccggagctggtgcaggctctggttctggttctagctcttcctcaagttcatcgtcctcttcgtcttctagttctgggtctggttccggg |
314 |
Q |
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|||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| || ||||| ||||||||||| || || ||||| ||| |
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| T |
54084609 |
tggctctggagccggagcaggagctggctctggctctggttctagttcttcctcaagttcatcatcatcttcatcttctagttccggttccggttctggg |
54084708 |
T |
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| Q |
315 |
gcagggtcggaagcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
380 |
Q |
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| T |
54084709 |
gcagggtcggaggcaggctcatatgcaggctctcgggctggttcgggatcaggtggtagaagtcgc |
54084774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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