View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20493_low_3 (Length: 269)

Name: NF20493_low_3
Description: NF20493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20493_low_3
NF20493_low_3
[»] chr8 (10 HSPs)
chr8 (1-252)||(2004685-2004936)
chr8 (1-252)||(1968699-1968950)
chr8 (1-252)||(2008065-2008316)
chr8 (1-252)||(2011680-2011931)
chr8 (1-252)||(1964763-1965014)
chr8 (1-141)||(2018462-2018602)
chr8 (1-252)||(1963099-1963350)
chr8 (1-228)||(2015079-2015306)
chr8 (77-252)||(2432988-2433163)
chr8 (1-47)||(2436704-2436750)
[»] chr1 (2 HSPs)
chr1 (1-122)||(5902402-5902523)
chr1 (1-111)||(5905897-5906007)
[»] scaffold0078 (3 HSPs)
scaffold0078 (1-85)||(22055-22139)
scaffold0078 (1-81)||(2805-2885)
scaffold0078 (1-81)||(57348-57428)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-81)||(15416-15496)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2004685 - 2004936
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2004685 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 2004784  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2004785 tccaaccatgttagacattccaacccatgattagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttc 2004884  T
Q  201 cttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  2004885 cttcatctttcattgcacttataggacccatctccatttctaggaagctatt 2004936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1968950 - 1968699
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||| |||||||||    
T  1968950 actcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgttta 1968851  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    |||||||| |  ||||| ||||| |||| |  | ||||||| ||||||  |  |||  |||| || ||||||||||||||||| |||||||| |||||||    
T  1968850 tccaaccaggccagacactccaagccattagcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttc 1968751  T
Q  201 cttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    | || ||||||||||| |||||||| ||||||||||  || |||||||||||    
T  1968750 cctcctctttcattgcacttataggtcccatctccaattccaggaagctatt 1968699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2008065 - 2008316
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||    
T  2008065 actcaattccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgttta 2008164  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    |||||||| |  ||||| ||||| |||| |  | ||||||| ||  ||  |  |||   ||| || ||||||||||||||||| |||||||| |||| ||    
T  2008165 tccaaccaggccagacactccaagccattagcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctc 2008264  T
Q  201 cttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    | || ||||||||||| |||| |||||||||||| || ||||||||||||||    
T  2008265 cctcctctttcattgcacttagaggacccatctctatttctaggaagctatt 2008316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2011680 - 2011931
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||| |||||     
T  2011680 actcaattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttg 2011779  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    || |||||||  ||||| ||||| |||| |  | ||||| | |||| |  || |||| |||||||||||||||||||||| || | ||||||  ||||||    
T  2011780 tctaaccatgacagacactccaaaccattagcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttc 2011879  T
Q  201 cttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    |||| ||| ||| |||  ||||||| ||||| ||||| |||| |||||||||    
T  2011880 cttcctctgtcaatgcatttataggtcccatttccatttctaagaagctatt 2011931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1965014 - 1964763
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||| || |||| |||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||     
T  1965014 actcaattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttg 1964915  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcac---cggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcac 197  Q
    || |||||||  ||||| |||||   | ||||||||||||   | |||| |  || |||   |||||||||||||||||||||||| | ||||||  |||    
T  1964914 tctaaccatgacagacactccaa---accattagcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccac 1964818  T
Q  198 ttccttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    ||||||| ||| ||  |||| ||||||| ||||| ||||| |||| |||||||||    
T  1964817 ttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctatt 1964763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 2018462 - 2018602
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||     
T  2018462 actcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttg 2018561  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcacc 141  Q
    ||||||||||  ||||| | |||||||| || | |||||||    
T  2018562 tccaaccatgccagacacttcaacccattatcatcatcacc 2018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1963350 - 1963099
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||| || ||||| |||||||| ||||||||||||||||||||    |||||     
T  1963350 actcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttg 1963251  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    ||||||||||| ||||| || |||  || |  | ||||||| ||  ||  || |||  |||| ||||||||||||| ||||||  || ||||||||||||    
T  1963250 tccaaccatgtcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc 1963151  T
Q  201 cttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    |||| ||| ||||||||  |||||||||| | || || || |||||||||||    
T  1963150 cttcatctgtcattgcttctataggacccttttcaatttccaggaagctatt 1963099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2015079 - 2015306
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||| || |||||||| ||||||||||||| ||||||||||||  | |||||     
T  2015079 actcaattccaaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttg 2015178  T
Q  101 tccaaccatgttagacattccaacccatcattagcatcaccggaactttctattgtcgggatgatgggtccaacaggatacacgggagggttttcacttc 200  Q
    ||||||||||  |||||||| |||  || |  | ||||||| ||  ||  || |||  |||| ||||||||||||| ||||||  || ||||||||||||    
T  2015179 tccaaccatgccagacattcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc 2015278  T
Q  201 cttcgtctttcattgctcttataggacc 228  Q
    |||||||| ||| ||||  |||||||||    
T  2015279 cttcgtctgtcagtgcttctataggacc 2015306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 252
Target Start/End: Complemental strand, 2433163 - 2432988
Alignment:
Q  77 aaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatcattagcatcaccg---gaactttctattgtcgggatgatgggtccaa 173  Q
    |||||||| |||||||| || | |||||||||||  ||||| ||||||  || |||||||||| ||   ||||||  ||||||| |||||||||||||||    
T  2433163 aaaactgagcaaggttgttggtcatccaaccatgacagacactccaac--at-attagcatcatcgtcagaacttgttattgtctggatgatgggtccaa 2433067  T
Q  174 caggatacacgggagggttttcacttccttcgtctttcattgctcttataggacccatctccatatctaggaagctatt 252  Q
    ||||||||||  |||| |||||||||||||| ||| ||| |||| ||||||||||| | ||||| |||| |||||||||    
T  2433066 caggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaagctatt 2432988  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2436750 - 2436704
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaa 47  Q
    |||| |||||| ||| |||||||||||||||||||||||||||||||    
T  2436750 actcgattccagaccgaaagccagctcaacaatttgttcttgtgaaa 2436704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 5902523 - 5902402
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||| | ||||| |||| ||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||| ||||||    
T  5902523 actcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgttta 5902424  T
Q  101 tccaaccatgttagacattcca 122  Q
    |  |||||||| ||||| ||||    
T  5902423 tgtaaccatgtcagacactcca 5902402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 5906007 - 5905897
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgttta 100  Q
    ||||||||||||||| | ||| |||||| || |||||||||||||||||| ||| || || |||||||| |||||||||||||||||||| |||||||||    
T  5906007 actcaattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgttta 5905908  T
Q  101 tccaaccatgt 111  Q
    || ||||||||    
T  5905907 tctaaccatgt 5905897  T

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Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaa 85  Q
    ||||||||||||||| ||||| ||||||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||||||    
T  22139 actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa 22055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2885 - 2805
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 81  Q
    ||||||||||||||| ||||| || |||   || |||  |||||||||||| || ||||| |||||||| |||||||||||    
T  2885 actcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttccaaaagaaacatacaaaac 2805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 57428 - 57348
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 81  Q
    ||||||||||||||| ||||| || |||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||    
T  57428 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 57348  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15416 - 15496
Alignment:
Q  1 actcaattccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaac 81  Q
    ||||||||||||||| ||||| || |||   ||||||  ||| |||||||| || ||||| |||||||| |||||||||||    
T  15416 actcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaac 15496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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