View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20493_low_4 (Length: 267)
Name: NF20493_low_4
Description: NF20493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20493_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 8394695 - 8394935
Alignment:
| Q |
11 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcag |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394695 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcag |
8394794 |
T |
|
| Q |
111 |
tcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394795 |
tcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
8394894 |
T |
|
| Q |
211 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394895 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
8394935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 8412754 - 8412514
Alignment:
| Q |
11 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8412754 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcag |
8412655 |
T |
|
| Q |
111 |
tcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412654 |
tcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
8412555 |
T |
|
| Q |
211 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412554 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
8412514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 8434852 - 8434612
Alignment:
| Q |
11 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8434852 |
aatactccattattagaaaacaacaacatcacacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcag |
8434753 |
T |
|
| Q |
111 |
tcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434752 |
tcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattac |
8434653 |
T |
|
| Q |
211 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434652 |
tctcactgctacaaccatgtctggtgttgcagctgtcacaa |
8434612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 85 - 251
Target Start/End: Complemental strand, 8406560 - 8406394
Alignment:
| Q |
85 |
taatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406560 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8406461 |
T |
|
| Q |
185 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8406460 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaa |
8406394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 8395012 - 8395178
Alignment:
| Q |
85 |
taatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8395012 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8395111 |
T |
|
| Q |
185 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaa |
251 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8395112 |
ctattaaactcaataaaaatgattactctcactgctacaaccatgtctggagttgcagctgtcacaa |
8395178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 45 - 254
Target Start/End: Complemental strand, 8431743 - 8431539
Alignment:
| Q |
45 |
aaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtattagacagaatagaaatgca |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| || |||||||||| |||||||||||||||||| |
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|
| T |
8431743 |
aaatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcagacagaatagaaatgca |
8431646 |
T |
|
| Q |
145 |
tcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagct |
244 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
8431645 |
tcacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatgtctggtgttgcagct |
8431549 |
T |
|
| Q |
245 |
gtcacaagtg |
254 |
Q |
| |
|
|||||||||| |
|
|
| T |
8431548 |
gtcacaagtg |
8431539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 8417882 - 8417746
Alignment:
| Q |
104 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
203 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| |||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || | |
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|
| T |
8417882 |
tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaaca |
8417783 |
T |
|
| Q |
204 |
tgattactctcactgctacaaccatgtctggtgttgc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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|
| T |
8417782 |
tgattactctcactgctacaaccatgtctggtcttgc |
8417746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 8375339 - 8375475
Alignment:
| Q |
104 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
203 |
Q |
| |
|
|||||| |||||||||| || | || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || | |
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|
| T |
8375339 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca |
8375438 |
T |
|
| Q |
204 |
tgattactctcactgctacaaccatgtctggtgttgc |
240 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8375439 |
tgattactcttactgctacaaccatgtctggtgttgc |
8375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 8439764 - 8439628
Alignment:
| Q |
104 |
tatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
203 |
Q |
| |
|
|||||| |||||||||| || | || ||| | ||||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8439764 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaaca |
8439665 |
T |
|
| Q |
204 |
tgattactctcactgctacaaccatgtctggtgttgc |
240 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8439664 |
tgattactcttactgctacaaccatgtctggtgttgc |
8439628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 8368931 - 8368812
Alignment:
| Q |
97 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
196 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8368931 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8368832 |
T |
|
| Q |
197 |
ataaatatgattactctcac |
216 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8368831 |
atcaacatgatcactctcac |
8368812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 8400479 - 8400598
Alignment:
| Q |
97 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
196 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8400479 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8400578 |
T |
|
| Q |
197 |
ataaatatgattactctcac |
216 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8400579 |
atcaacatgatcactctcac |
8400598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 8422056 - 8422175
Alignment:
| Q |
97 |
tcaactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
196 |
Q |
| |
|
||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8422056 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8422155 |
T |
|
| Q |
197 |
ataaatatgattactctcac |
216 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8422156 |
atcaacatgatcactctcac |
8422175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 8404604 - 8404470
Alignment:
| Q |
99 |
aactctatgcagtcttggaagctgtattagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaat |
198 |
Q |
| |
|
||||||||||| | | ||| ||||||| ||||||||| ||||||||| | ||| | || |||||||| |||| ||||| | ||| |||||||||| || |
|
|
| T |
8404604 |
aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat |
8404505 |
T |
|
| Q |
199 |
aaatatgattactctcactgctacaaccatgtctg |
233 |
Q |
| |
|
|| ||||| || ||||| ||| |||| ||||||| |
|
|
| T |
8404504 |
caacatgataacactcacagcttcaacaatgtctg |
8404470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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