View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20494_high_10 (Length: 237)
Name: NF20494_high_10
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20494_high_10 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: scaffold0061 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 12009 - 12183
Alignment:
| Q |
1 |
aaatcttctcaaaaaccccacaaatccaagagaaattcaagatatggatgaataagagaatagggtttcaacacttttattaagatcaatgatatttgat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12009 |
aaatcttctcaaaaaccccacaaacccaagagaaattcaagatatggatgaataagagaatagggtttcaacacttttattaagatcaataatatttgat |
12108 |
T |
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| Q |
101 |
attaatttttagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
175 |
Q |
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| T |
12109 |
attaattattagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
12183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 21066 - 21240
Alignment:
| Q |
1 |
aaatcttctcaaaaaccccacaaatccaagagaaattcaagatatggatgaataagagaatagggtttcaacacttttattaagatcaatgatatttgat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21066 |
aaatcttctcaaaaaccccacaaacccaagagaaattcaagataaggatgaataagagaatagggtttcaacacttttattaagatcaatgatatttgat |
21165 |
T |
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| Q |
101 |
attaatttttagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
175 |
Q |
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| T |
21166 |
cttaattattagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
21240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 24646653 - 24646480
Alignment:
| Q |
1 |
aaatcttctcaaaaaccccacaaatccaagagaaattcaagatatggatgaataagagaatagggtttcaacacttttattaagatcaatgatatttgat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24646653 |
aaatcttctcaaaaaccccacaaacccaagagaaat-caagatatggatgaataagagaatagggtttcaacacttttattaagatcaataatatttgat |
24646555 |
T |
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| Q |
101 |
attaatttttagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24646554 |
attaatttttagatgtggataagaagctctcaactctctcactcataatgttgaagaaatgcagaaactatcttt |
24646480 |
T |
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