View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20494_high_3 (Length: 357)
Name: NF20494_high_3
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20494_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 103 - 357
Target Start/End: Original strand, 37718394 - 37718648
Alignment:
| Q |
103 |
ccacatagatcaaaccaattgtggatttattttactctattgattattcctttagatggctcaaatctaaaatgaattttctttcaaaagttcagtatac |
202 |
Q |
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| T |
37718394 |
ccacatagatcaaaccaattgtggatttattttactctattgattattcctttagatggctcaaatctaaaatgcattttctttcaaaagttcagtatac |
37718493 |
T |
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| Q |
203 |
tagcttcatagtgagataatgaatttatttcctttgaacaacattacaatgggatagaccttaaaaaattggtcaaaattcattctgtacaatatataca |
302 |
Q |
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| T |
37718494 |
tagcttcatagtgagataatgaatttatttcctttgaacaacattacaatgggatagaccttaaaaaattggtcaaaattcattttgtacaatatataca |
37718593 |
T |
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| Q |
303 |
tgagtaatggaaatgaataaataagaatcacctacatgaatcaatggtaaagaat |
357 |
Q |
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| T |
37718594 |
tgagtaatggaaatgaataaataagaatcacctacatgaatcaatggtaaagaat |
37718648 |
T |
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Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 204 - 355
Target Start/End: Complemental strand, 13012101 - 13011946
Alignment:
| Q |
204 |
agcttcatagtgagataatgaatttatttcctttgaacaacattacaatgggatagaccttaaaaaattggtcaaaattcattctgtacaata----tat |
299 |
Q |
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| T |
13012101 |
agctccatagtgagataatgaatttatttcctttgaacaatattacaatgggatagaccttaaaaaattggtcaaaattcatcttgtacaatgcatgtat |
13012002 |
T |
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| Q |
300 |
acatgagtaatggaaatgaataaataagaatcacctacatgaatcaatggtaaaga |
355 |
Q |
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| T |
13012001 |
acatgagtaggggaaatgaataaatagaaattatctacatgaatcaatggtaaaga |
13011946 |
T |
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