View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20494_low_12 (Length: 219)
Name: NF20494_low_12
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20494_low_12 |
 | |
|
| [»] scaffold0060 (1 HSPs) |
| | |
|
| [»] scaffold1655 (1 HSPs) |
| | |
|
| [»] scaffold0506 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0060 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 3933 - 3734
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3933 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
3834 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3833 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
3734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 41496122 - 41496321
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41496122 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
41496221 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41496222 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
41496321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 13088048 - 13088251
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgtt-gattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgt |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
13088048 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttttttgattagtttaaagaattgtaagctaaataaaacaatccagatattgttgt |
13088147 |
T |
|
| Q |
105 |
taattct---tcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtctt |
201 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13088148 |
taattcttcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacataggattccttaaggtgcctaaagcaaatataaaggtctt |
13088247 |
T |
|
| Q |
202 |
ctat |
205 |
Q |
| |
|
|||| |
|
|
| T |
13088248 |
ctat |
13088251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 7480315 - 7480514
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7480315 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
7480414 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7480415 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
7480514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 39873126 - 39873325
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39873126 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
39873225 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39873226 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
39873325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 2395009 - 2394810
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2395009 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
2394910 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2394909 |
aattcttcttctttgctcattgtgtttagcatttcattgcagaaaaacaatttacatagaattccttaaggtgcctaaaacaaatataaaagtcttctat |
2394810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 23778190 - 23778389
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23778190 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
23778289 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
23778290 |
aattcttcttctttgctcattgtgtttagcatttcattacaggaaaacaatttacatagaatttcttaaggtgcctgaagcaaatataaaggtcttctat |
23778389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 23865143 - 23865342
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23865143 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
23865242 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
23865243 |
aattcttcttctttgctcattgtgtttagcatttcattacaggaaaacaatttacatagaatttcttaaggtgcctgaagcaaatataaaggtcttctat |
23865342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 24349884 - 24350082
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24349884 |
aaaaattcttgatattgtggaggatataatgcaaatttaatttttt-ttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
24349982 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24349983 |
aattcttcttatttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
24350082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 34763062 - 34763261
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
34763062 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattattgtt |
34763161 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34763162 |
aattcttcttctttgctcattgtgtttagcatttcatttcaggaaaacaatttacatagaatttcttaaggtgcctaaagcaaatataaaggtcttctat |
34763261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 24327460 - 24327259
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttg--attagtttaaagaattgtaagctaaataaaacaatccaaatgttgttg |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24327460 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttttttgtattagtttaaagaattgtaagctaaataaaacaatccaaatattgttg |
24327361 |
T |
|
| Q |
104 |
ttaattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttct |
203 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24327360 |
ttaattcttcttatttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttct |
24327261 |
T |
|
| Q |
204 |
at |
205 |
Q |
| |
|
|| |
|
|
| T |
24327260 |
at |
24327259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 42646012 - 42645813
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42646012 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
42645913 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42645912 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
42645813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 964926 - 964728
Alignment:
| Q |
8 |
aaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtta |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
964926 |
aaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtta |
964827 |
T |
|
| Q |
107 |
attcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
964826 |
attcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
964728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 7 - 202
Target Start/End: Complemental strand, 49806237 - 49806041
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49806237 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
49806138 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49806137 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttc |
49806041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 13452469 - 13452270
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
13452469 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttatt |
13452370 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13452369 |
aattcttcttctttgctcattgagtttagcatttcattgcaggaaaacaatttacatagaatttcttaaggtgcctaaagcaaatataaaggtcttctat |
13452270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 54319100 - 54318902
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54319100 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
54319001 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||| |||||||||||| |||||||| ||||||||| |
|
|
| T |
54319000 |
aattcttcttctttgctcattgtgtttagcatttcatcgcaggaaaacaatttacatagaattccttagggtgcctaaagc-aatataaaggtcttctat |
54318902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 35186648 - 35186771
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
35186648 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattaatttaaagaattgtaagctaaataaaacaattcaaatattattgtt |
35186747 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtg |
129 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35186748 |
aattcttcttctttgctcattgtg |
35186771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 82 - 205
Target Start/End: Complemental strand, 29619469 - 29619346
Alignment:
| Q |
82 |
taaaacaatccaaatgttgttgttaattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcct |
181 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||| |
|
|
| T |
29619469 |
taaaacaatccaaatattgttgttaatttttcttctttgctcattgtgtttagcatttcattgcaggaaaacaattttcatagaattccttaaggtgcct |
29619370 |
T |
|
| Q |
182 |
aaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
29619369 |
aaagcaaatataaaggtcttctat |
29619346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 35188071 - 35188153
Alignment:
| Q |
123 |
cattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35188071 |
cattgtgtttagcatttcattgcaggaaaataatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
35188153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 39926399 - 39926598
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39926399 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
39926498 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39926499 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
39926598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 34108304 - 34108105
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
34108304 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagcaaaataaaacaatccaaatattgttgtt |
34108205 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
34108204 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaagtataaaggtcttctat |
34108105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 43622070 - 43622269
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43622070 |
aaaaattattgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
43622169 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
43622170 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggccttctat |
43622269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 40233578 - 40233379
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40233578 |
aaaaattcttgatattttggaggatataatgcaaatttaattttatgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
40233479 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40233478 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaataatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
40233379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 11154914 - 11154715
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
11154914 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatcaaaatattattgtt |
11154815 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11154814 |
aattcttcttctttgcgcattgtgtttagcatttcattgcaggaaaacaatttacatagaatttcttaaggtgcctaaagcaaatataaaggtcttctat |
11154715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 19766275 - 19766163
Alignment:
| Q |
93 |
aaatgttgttgttaattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatat |
192 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19766275 |
aaatattgttgttaattcttcttatttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatat |
19766176 |
T |
|
| Q |
193 |
aaaagtcttctat |
205 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
19766175 |
aaaggtcttctat |
19766163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 45058798 - 45058599
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
45058798 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccgaatattgttgtt |
45058699 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45058698 |
aattcttcttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
45058599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 15033990 - 15033799
Alignment:
| Q |
15 |
ttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgttaattcttc |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15033990 |
ttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattttaagctaaataaaacaatccaaatattgttgttaattcttc |
15033891 |
T |
|
| Q |
114 |
ttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15033890 |
ttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
15033799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 30407771 - 30407572
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
30407771 |
aaaaattcttgatattgtggagtatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccgaatattgttgtt |
30407672 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
30407671 |
aattcttcttctttgcacattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaaacaaatataaaggtcttctat |
30407572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 53577864 - 53578063
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53577864 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
53577963 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53577964 |
aattcttcttctttgctcattgtgtttagcatttcattgcagaaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaagatcttctat |
53578063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 53 - 202
Target Start/End: Complemental strand, 10257059 - 10256910
Alignment:
| Q |
53 |
ttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgttaattcttcttctttgctcattgtgtttaacatttcattgcaggaata |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
10257059 |
ttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgttaattcttcttctttgctcattgtgtttagcatttcattgcaggaaaa |
10256960 |
T |
|
| Q |
153 |
caatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttc |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10256959 |
caatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttc |
10256910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 10257186 - 10257061
Alignment:
| Q |
7 |
aaaaattcttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgtt |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10257186 |
aaaaattcttgatattgtggaggatataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatattgttgtt |
10257087 |
T |
|
| Q |
106 |
aattcttcttctttgctcattgtgtt |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10257086 |
aattcttcttctttgctcattgtgtt |
10257061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1655 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold1655
Description:
Target: scaffold1655; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 297 - 106
Alignment:
| Q |
15 |
ttgatattgtggag-atataatgcaaatttaattttttgttgattagtttaaagaattgtaagctaaataaaacaatccaaatgttgttgttaattcttc |
113 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
297 |
ttgatattgtggaggatataatgcaaatttaattttttgttgaatagtttaaagaattgtaagctaaataaaacaatccaaatattgttgttaattcttc |
198 |
T |
|
| Q |
114 |
ttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatataaaagtcttctat |
205 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
197 |
ttctttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatataaaggtcttctat |
106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0506 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0506
Description:
Target: scaffold0506; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 93 - 205
Target Start/End: Complemental strand, 116 - 4
Alignment:
| Q |
93 |
aaatgttgttgttaattcttcttctttgctcattgtgtttaacatttcattgcaggaatacaatttacatggaattccttaaggtgcctaaagcaaatat |
192 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
116 |
aaatattgttgttaattcttcttatttgctcattgtgtttagcatttcattgcaggaaaacaatttacatagaattccttaaggtgcctaaagcaaatat |
17 |
T |
|
| Q |
193 |
aaaagtcttctat |
205 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
16 |
aaaggtcttctat |
4 |
T |
|
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