View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20494_low_2 (Length: 400)

Name: NF20494_low_2
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20494_low_2
NF20494_low_2
[»] chr3 (3 HSPs)
chr3 (41-384)||(8855851-8856208)
chr3 (1-42)||(8856293-8856334)
chr3 (8-42)||(8856225-8856259)
[»] chr8 (3 HSPs)
chr8 (41-384)||(14366952-14367307)
chr8 (325-380)||(25556017-25556072)
chr8 (1-42)||(14366894-14366935)
[»] chr6 (2 HSPs)
chr6 (41-384)||(19576238-19576594)
chr6 (1-42)||(19576611-19576652)
[»] chr2 (2 HSPs)
chr2 (236-384)||(26383272-26383420)
chr2 (1-31)||(26382848-26382878)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 41 - 384
Target Start/End: Complemental strand, 8856208 - 8855851
Alignment:
Q  41 tagtagattgtcattatttcctttttatgacgtggtatacctcatactgaaattttgttttgt-----------------ttggttaatttaaggatttg 123  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||||                 ||| ||||||||||||||||    
T  8856208 tagtagattgtcattatttcctttttatgccgtggtatacctcatactagaactttgttttgtgaaccaaactagtatttttgattaatttaaggatttg 8856109  T
Q  124 tttatttacttcaatatttggcaatttaagatgcttcagtcgcctttgtt-atgcaaatagctaccataaaatatagggtaaaagatcatactgtttgat 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8856108 tttatttacttcaatatttggcaatttaagatgcttcagtcgcctttgtttatgcaa-tagctaccataaaatatagggtaaaagatcatactgtttgat 8856010  T
Q  223 gctttcatgaaaactaatttaaagatttgtatatccctcctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttata 322  Q
    ||||||||||||||||||||||||||||   ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8856009 gctttcatgaaaactaatttaaagatttacctatc---cctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttata 8855913  T
Q  323 tcattatacggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 384  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8855912 ttattataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 8855851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8856334 - 8856293
Alignment:
Q  1 gattttataacttcataactttatcgtttcggcagttcagta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  8856334 gattttataacttcataactttatcgtttcggcggttcagta 8856293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 8856259 - 8856225
Alignment:
Q  8 taacttcataactttatcgtttcggcagttcagta 42  Q
    |||||||||||||||||||||||||| ||||||||    
T  8856259 taacttcataactttatcgtttcggcggttcagta 8856225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 41 - 384
Target Start/End: Original strand, 14366952 - 14367307
Alignment:
Q  41 tagtagattgtcattatttcctttttatgacgtggtatacctcatactgaaatttt-gttttgt---------------ttggttaatttaaggatttgt 124  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||| |||||| |||||||               |||||||||||||||||||||    
T  14366952 tagtagattgtcacttttccctttttatgacgtggtatacctcatactggaatttttgttttgtgaaccaaactcgtatttggttaatttaaggatttgt 14367051  T
Q  125 ttatttacttcaatatttggcaatttaagatgcttcagtcgcctttgtt-atgcaaatagctaccataaaatatagggtaaaagatcatactgtttgatg 223  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14367052 ttatttacttcaatatttggcaatttaagatgcttcagttgcctttgtttatgcaa-tagctaccataaaatatagggtaaaagatcatactgtttgatg 14367150  T
Q  224 ctttcatgaaaactaatttaaagatttgtatatccctcctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttatat 323  Q
    ||||||||||||| ||||||||||||||| ||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  14367151 ctttcatgaaaacaaatttaaagatttgtctatc---cctcccatcacatgattttggagcacagttgttatatgcgtcgaatggataatcc-tttatat 14367246  T
Q  324 cattatacggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 384  Q
      ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14367247 ttttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 14367307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 25556017 - 25556072
Alignment:
Q  325 attatacggtctgagatattcttagcatatggttattgactctcaagttcatgtag 380  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25556017 attataaggtctgagatattcttagcatatggttattgactctcaagttcatgtag 25556072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14366894 - 14366935
Alignment:
Q  1 gattttataacttcataactttatcgtttcggcagttcagta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  14366894 gattttataacttcataactttatcgtttcggcggttcagta 14366935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 41 - 384
Target Start/End: Complemental strand, 19576594 - 19576238
Alignment:
Q  41 tagtagattgtcattatttcctttttatgacgtggtatacctcatact-gaaattttgttttgt----------------ttggttaatttaaggatttg 123  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||                | ||||||||||||||||||    
T  19576594 tagtagattgtcattttttcctttttatggcgtggtatacctcatactcgaatttttgttttgtgaaccaaactcgtatttgggttaatttaaggatttg 19576495  T
Q  124 tttatttacttcaatatttggcaatttaagatgcttcagtcgcctttgtt-atgcaaatagctaccataaaatatagggtaaaagatcatactgtttgat 222  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19576494 tttatttacttcaatatttagcaatttaagatgcttcagttgcctttgtttatgcaa-tagctaccataaaatatagggtaaaagatcatactgtttgat 19576396  T
Q  223 gctttcatgaaaactaatttaaagatttgtatatccctcctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttata 322  Q
    |||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  19576395 gctttcatgaaaactaatttaaagatttgtctatc---cctcccatcacatgattttggagcacagttgttatatgcgtcgaatggataatcc-tttata 19576300  T
Q  323 tcattatacggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 384  Q
    |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19576299 tttttataaggtctgagatattcttagcatatggttattgactctcaagttcatgtagtatt 19576238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19576652 - 19576611
Alignment:
Q  1 gattttataacttcataactttatcgtttcggcagttcagta 42  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  19576652 gattttataacttcataactttatcgtttcggcggttcagta 19576611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 236 - 384
Target Start/End: Original strand, 26383272 - 26383420
Alignment:
Q  236 ctaatttaaagatttgtatatccctcctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttatatcattatacggtc 335  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26383272 ctaatttaaagatttgtctatccctcctcccatcacatgattttggagcacggttgttatatgcgtcgaatggataatccttttatattattatacggtc 26383371  T
Q  336 tgagatattcttagcatatggttattgactctcaagttcatgtagtatt 384  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26383372 tgagatattcttagcatatggttattgagtctcaagttcatgtagtatt 26383420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26382848 - 26382878
Alignment:
Q  1 gattttataacttcataactttatcgtttcg 31  Q
    |||||||||||||||||||||||||||||||    
T  26382848 gattttataacttcataactttatcgtttcg 26382878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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