View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20494_low_5 (Length: 287)
Name: NF20494_low_5
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20494_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 24163371 - 24163113
Alignment:
| Q |
11 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24163371 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
24163272 |
T |
|
| Q |
111 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24163271 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
24163172 |
T |
|
| Q |
211 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24163171 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
24163113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 1478540 - 1478796
Alignment:
| Q |
11 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
110 |
Q |
| |
|
||||| ||||||||||||||| | ||||| |||||||||||| ||||||||||| || |||||||| |||||||||||| | |||||||||||||||| |
|
|
| T |
1478540 |
aagaacattgataaagcattggtcgaggctttccaaccattaaacatctctgattataattcaatcttctggattgctcacccaggtggacccgcaattc |
1478639 |
T |
|
| Q |
111 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
210 |
Q |
| |
|
||||| || |||| |||||||||| ||| ||||||||||| |||| |||||||| || | |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1478640 |
tagaccaagttgaagaaaagttaggcttaaaacctgaaaaaatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagcgcatgtgtatt |
1478739 |
T |
|
| Q |
211 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacagg |
267 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
1478740 |
gttcatcttggatgagatgagaaagaaatcggctcaagagggacttaaaaccacagg |
1478796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 1482734 - 1482992
Alignment:
| Q |
11 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
110 |
Q |
| |
|
||||| ||||||||||||||| | || || |||||||||||| || |||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1482734 |
aagaacattgataaagcattgatcgatgctttccaaccattaaacatttctgattacaactcaatcttttggattgctcatccaggtggacccgcaattc |
1482833 |
T |
|
| Q |
111 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
210 |
Q |
| |
|
| || || |||| ||||||||| ||| |||||||||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482834 |
ttgatcaagttgaacaaaagttaggcttaaaacctgaaaagatgaaagccactagagaagtacttagtgaatatggtaacatgtcaagtgcatgtgtatt |
1482933 |
T |
|
| Q |
211 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
|| ||||||||||||||| |||| ||||| ||||||| || || ||||||||||||| |
|
|
| T |
1482934 |
gtttatcttagatgagatgcgaaagaaatcttctcaagaggggcttaagaccacaggag |
1482992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 1499781 - 1500037
Alignment:
| Q |
11 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
110 |
Q |
| |
|
|||||||||||||||| | | |||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || ||||||| |
|
|
| T |
1499781 |
aagaatattgataaagtactagttgaggcatttcaaccattaggaatctctgattataactcaatcttttggattgctcatccgggtggtcctgcaattc |
1499880 |
T |
|
| Q |
111 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
210 |
Q |
| |
|
|||| |||||||| ||||||||| ||||||| |||||||| |||| | | ||| || ||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
1499881 |
tagatcaaattgagcaaaagttaggcttgaaagctgaaaagttgagggtcgttagggaagtgcttagtgaatatggtaatatgtctagtgcatctgtatt |
1499980 |
T |
|
| Q |
211 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacagg |
267 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||||| |||| ||||||||||| |
|
|
| T |
1499981 |
gttcatcttgaatgagatgagaaggaaatcgactcaagatcgacttaagaccacagg |
1500037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 1505528 - 1505760
Alignment:
| Q |
21 |
ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat |
120 |
Q |
| |
|
||||||||||| |||| || |||||||||||||| | ||||| |||||||||||||| |||||||| ||| ||||||| || |||||| |||| || | |
|
|
| T |
1505528 |
ataaagcattggttgatgctttccaaccattaggagtttctgactacaactcaatcttctggattgcacaccctggtggccctgcaattttagatcaagt |
1505627 |
T |
|
| Q |
121 |
tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatctta |
220 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||| ||||||||| || |||||||||||||||| || ||||||||||||||||| || || |||||| |
|
|
| T |
1505628 |
agagcaaaagttagccttaaagcctgaaaagatgaaagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgttttgtttatctta |
1505727 |
T |
|
| Q |
221 |
gatgagatgagaaacaaatcggctcaagatgga |
253 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| |
|
|
| T |
1505728 |
gatgaaatgagaaagaaatcagctcaagatgga |
1505760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 1492719 - 1492938
Alignment:
| Q |
21 |
ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat |
120 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||| || | |
|
|
| T |
1492719 |
ataaagcattagttgaggctttccaaccattgggaatctctgattacaactcaatcttttggattgcacaccctggtggacctgcaattttagaccaagt |
1492818 |
T |
|
| Q |
121 |
tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatctta |
220 |
Q |
| |
|
||| ||||||||||||| || || ||||||||||| ||||| | | |||| ||||||||||| || |||||||||||||||||||| || ||||| |
|
|
| T |
1492819 |
agagcaaaagttagccttaaagcccgaaaagatgagagccacacgggaggtgctaagtgaatatggaaatatgtcaagtgcatgtgtattgtttatcttg |
1492918 |
T |
|
| Q |
221 |
gatgagatgagaaacaaatc |
240 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
1492919 |
gatgaaatgagaaagaaatc |
1492938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 1509670 - 1509906
Alignment:
| Q |
17 |
attgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagaca |
116 |
Q |
| |
|
|||||| ||||| || |||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| | | |||| |||||||| | ||| |
|
|
| T |
1509670 |
attgattaagcactgattgaggcatttcaaccattaaacatctctgattacaactcaatattttggattgctcacccagatggagccgcaattattgacc |
1509769 |
T |
|
| Q |
117 |
aaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcat |
216 |
Q |
| |
|
|| ||||| |||| |||||||| |||||||||| ||||| || ||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1509770 |
aagttgagcaaaaattagccttaaaacctgaaa-gatgaaggc---------aattcttagtgaatatggtaatatgtcaagtgcatgtgtattgttcat |
1509859 |
T |
|
| Q |
217 |
cttagatgagatgagaaacaaatcggctcaagatggactaaagacca |
263 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| ||| | ||||||| |
|
|
| T |
1509860 |
cttagacgagatgagaaagaaatcagctcaagagggaattaagacca |
1509906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 36 - 269
Target Start/End: Original strand, 1487236 - 1487469
Alignment:
| Q |
36 |
aggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagttagc |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |||||||||| ||| | || ||||| |||||| | ||| | |||| |||||||||| |
|
|
| T |
1487236 |
aggcattccaaccattaggcatctctgattacaatgcaattttttggattgtccacccaggcggacctgcaattttggaccatgttgaacaaaagttagc |
1487335 |
T |
|
| Q |
136 |
cttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgagaaac |
235 |
Q |
| |
|
|||||||| |||||||||| |||||||| || | ||||||||||||||||||||||||||||| |||||||| || || || ||||| |||||||| |
|
|
| T |
1487336 |
tttgaaaccggaaaagatgaaggccactagggaagtacttagtgaatatggtaacatgtcaagtgcttgtgtattgtttatattggatgaaatgagaaag |
1487435 |
T |
|
| Q |
236 |
aaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
| ||| |||||||| ||||| |||||||||||| |
|
|
| T |
1487436 |
agatcagctcaagagggacttgagaccacaggag |
1487469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 46706569 - 46706311
Alignment:
| Q |
11 |
aagaatattgataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattc |
110 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||| || |||||| |
|
|
| T |
46706569 |
aagaacattgataaagcattagttgaggctttccaaccattgggaatttctgattacaactcaatcttttggattgcacaccctggtggccctgcaattt |
46706470 |
T |
|
| Q |
111 |
tagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtatt |
210 |
Q |
| |
|
|||| || | ||| |||||||||||||||| |||||||||||||| ||||||||| || |||||||||||||||| || ||||||||||||||||| || |
|
|
| T |
46706469 |
tagatcaagtagagcaaaagttagccttgaagcctgaaaagatgagagccactagagaagtgcttagtgaatatggaaatatgtcaagtgcatgtgtttt |
46706370 |
T |
|
| Q |
211 |
attcatcttagatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| |||||||||| || ||||| ||||||| |
|
|
| T |
46706369 |
gtttatcttagatgaaatgagaaagaaatcaactcaagatggtctgaagacaacaggag |
46706311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 5289267 - 5289049
Alignment:
| Q |
22 |
taaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaatt |
121 |
Q |
| |
|
|||||||||| ||||||| ||| | ||||| || || ||||||||||||||||||||||||||||| || | |||||||| ||||||||||| || | |
|
|
| T |
5289267 |
taaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtg |
5289168 |
T |
|
| Q |
122 |
gaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttag |
221 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||| ||| |||||| || |||| ||||||||||| || ||||||||||||||||| || || ||||||| |
|
|
| T |
5289167 |
gagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttag |
5289068 |
T |
|
| Q |
222 |
atgagatgagaaacaaatc |
240 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
5289067 |
atgaaatgagaaagaaatc |
5289049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 5310949 - 5311167
Alignment:
| Q |
22 |
taaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaatt |
121 |
Q |
| |
|
|||||||||| ||||||| ||| | ||||| || || ||||||||||||||||||||||||||||| || | |||||||| ||||||||||| || | |
|
|
| T |
5310949 |
taaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagta |
5311048 |
T |
|
| Q |
122 |
gaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttag |
221 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||| ||| |||||| || |||| ||||||||||| || ||||||||||||||||| || || ||||||| |
|
|
| T |
5311049 |
gagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttag |
5311148 |
T |
|
| Q |
222 |
atgagatgagaaacaaatc |
240 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
5311149 |
atgaaatgagaaagaaatc |
5311167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 5315663 - 5315881
Alignment:
| Q |
22 |
taaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaatt |
121 |
Q |
| |
|
|||||||||| ||||||| ||| | ||||| || || ||||||||||||||||||||||||||||| || | |||||||| ||||||||||| || | |
|
|
| T |
5315663 |
taaagcattggttgaggctttcgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtg |
5315762 |
T |
|
| Q |
122 |
gaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttag |
221 |
Q |
| |
|
||| ||||||||||||| || ||||||||||||| ||| |||||| || |||| ||||||||||| || ||||||||||| ||||| || || ||||||| |
|
|
| T |
5315763 |
gagcaaaagttagccttaaagcctgaaaagatgaatgcaactagagaagtgctcagtgaatatggaaatatgtcaagtgcgtgtgttttgtttatcttag |
5315862 |
T |
|
| Q |
222 |
atgagatgagaaacaaatc |
240 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
5315863 |
atgaaatgagaaagaaatc |
5315881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 5284860 - 5285078
Alignment:
| Q |
22 |
taaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaatt |
121 |
Q |
| |
|
|||||||||| ||||||| || | ||||| || || ||||||||||||||||||||||||||||| || | |||||||| ||||||||||| || | |
|
|
| T |
5284860 |
taaagcattggttgaggcttttgagccattgggaatttctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagta |
5284959 |
T |
|
| Q |
122 |
gaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttag |
221 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| ||| || ||| || |||| ||||||||||| || ||||||||||||||||| || || ||||| | |
|
|
| T |
5284960 |
gagcaaaagttagccttgaagcctgaaaagatgaatgcaaccagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttgg |
5285059 |
T |
|
| Q |
222 |
atgagatgagaaacaaatc |
240 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
5285060 |
atgaaatgagaaagaaatc |
5285078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 5303085 - 5303266
Alignment:
| Q |
59 |
tctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagttagccttgaaacctgaaaagatgagtg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||| ||||||||||| || | ||| |||||||| | ||||| ||||||||||||| || |
|
|
| T |
5303085 |
tctgattacaactcaatcttttggattgcacatcccggtggacctgcaattctagatcaagtagagcaaaagttatcattgaagcctgaaaagatgaatg |
5303184 |
T |
|
| Q |
159 |
ccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgagaaacaaatc |
240 |
Q |
| |
|
| |||||| || |||| ||||||||||| || ||||||||||||||||| || || ||||||||||| |||||||| ||||| |
|
|
| T |
5303185 |
caactagagaagtgctcagtgaatatggaaatatgtcaagtgcatgtgttttgtttatcttagatgaaatgagaaagaaatc |
5303266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 44133330 - 44133578
Alignment:
| Q |
21 |
ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat |
120 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||| || | |
|
|
| T |
44133330 |
ataaagcattggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagt |
44133429 |
T |
|
| Q |
121 |
tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatctta |
220 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||| || ||||||||||| ||||| || || |||||| |
|
|
| T |
44133430 |
tgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatctta |
44133529 |
T |
|
| Q |
221 |
gatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
||||| |||||||| || || |||||||||||| | ||||||||||||| |
|
|
| T |
44133530 |
gatgaaatgagaaagaagtcagctcaagatggattgaagaccacaggag |
44133578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 44129125 - 44129373
Alignment:
| Q |
21 |
ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat |
120 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||| || | |
|
|
| T |
44129125 |
ataaagctttggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagt |
44129224 |
T |
|
| Q |
121 |
tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatctta |
220 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||| || ||||||||||| ||||| || || |||||| |
|
|
| T |
44129225 |
tgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcttgtgttttgtttatctta |
44129324 |
T |
|
| Q |
221 |
gatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
||||| |||||||| || || |||||||||||||| |||||||| |||| |
|
|
| T |
44129325 |
gatgaaatgagaaagaagtcagctcaagatggactgaagaccacgggag |
44129373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 44141752 - 44142000
Alignment:
| Q |
21 |
ataaagcattgtttgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaat |
120 |
Q |
| |
|
||||||||||| ||||||| ||| |||||||||| || ||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||| || | |
|
|
| T |
44141752 |
ataaagcattggttgaggctttcgaaccattaggaatttctgattacaattcaatcttttggattgcacaccctggtggacctgcaattctagatcaagt |
44141851 |
T |
|
| Q |
121 |
tgaggaaaagttagccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatctta |
220 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||| || ||||||||||| ||||| || || |||||| |
|
|
| T |
44141852 |
tgagcaaaagttagccttaaaacctgaaaagatgaaagccaccagagaagtgcttagtgaatatggaaatatgtcaagtgcctgtgttttgtttatctta |
44141951 |
T |
|
| Q |
221 |
gatgagatgagaaacaaatcggctcaagatggactaaagaccacaggag |
269 |
Q |
| |
|
||||| |||||||| || || |||||||||||| | |||||||| |||| |
|
|
| T |
44141952 |
gatgaaatgagaaagaagtcagctcaagatggattgaagaccacgggag |
44142000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 231
Target Start/End: Complemental strand, 37858922 - 37858725
Alignment:
| Q |
34 |
tgaggcattccaaccattaggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagtta |
133 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||| || ||||||||||| || ||| |||||||||| |||||||| ||| || | || | || ||| |
|
|
| T |
37858922 |
tgaggcctttcaacctttaggtatctctgattacaattccatcttttggatcgcacaccctggtggaccagcaattctggaccaagtggaagccaaatta |
37858823 |
T |
|
| Q |
134 |
gccttgaaacctgaaaagatgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
231 |
Q |
| |
|
||| || || || || ||| |||||| || | ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
37858822 |
agcttaaagccagagaaaatgcaagccactcgacatgtgcttagcgagtatggtaacatgtcaagtgcatgtgtgttattcatcttggatgagatgag |
37858725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 37862809 - 37862751
Alignment:
| Q |
173 |
cttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
37862809 |
cttagcgaatatggtaacatgtcaagtgcgtgtgtgctattcatcttggatgagatgag |
37862751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 39030774 - 39030832
Alignment:
| Q |
173 |
cttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgag |
231 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| || |||||||| || ||||||||||| |
|
|
| T |
39030774 |
cttagtgagtatggtaacatgtcaagtccatccgtgttattcattttggatgagatgag |
39030832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 35251394 - 35251575
Alignment:
| Q |
53 |
ggtatctctgattacaactcaatcttttggattgctcactctggtggacccgcaattctagacaaaattgaggaaaagttagccttgaaacctgaaaaga |
152 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||| | |||||||| || ||||| ||| || ||||||| ||||||| |||||| |||||||| |
|
|
| T |
35251394 |
ggtatatcttattataactcaatcttttggattgctcacacgggtggaccagcgattcttgaccaagttgaggacaagttaggcttgaagcctgaaaaat |
35251493 |
T |
|
| Q |
153 |
tgagtgccactagaaaaatgcttagtgaatatggtaacatgtcaagtgcatgtgtattattcatcttagatgagatgagaaa |
234 |
Q |
| |
|
|| |||||| |||| || | ||| ||||| |||||||||||||| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
35251494 |
tggaagccactcgaaatgtgttgagtagttatgggaacatgtcaagtgcttgtgtgttgttcattttagatgaaatgagaaa |
35251575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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