View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20494_low_6 (Length: 284)
Name: NF20494_low_6
Description: NF20494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20494_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 32161205 - 32161454
Alignment:
| Q |
16 |
agagaagacataaatcgttaaatgattttcatggattaaaccaagttcataatttggtgggacaacaataaaaataggatgtatagaacttgatataagt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32161205 |
agagaagacataaatcgttaaatgattttcatggattaaaccaagttcataatttggtgggacaacaataaaaacaggatgtatagaacttgatataagt |
32161304 |
T |
|
| Q |
116 |
ttgataaatgtttaaataacaaaaatcgtgaagcaataacaagcgatatgacagaataacacccaggggcggacctgagtttacaatattagtggggcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
32161305 |
ttgataaatgtttaaataacaaaaatcgtgaagcaataacaagcgatacaacagaataacacccaggggcggacctgggtttacaatattaatggggcac |
32161404 |
T |
|
| Q |
216 |
aatttttcatcaaacaaattgtagtttaaagaataagaaaagattgtctg |
265 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32161405 |
aatttttcgtcaagcaaattgtagtttaaagaataagaaaagattgtctg |
32161454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 257
Target Start/End: Complemental strand, 31529552 - 31529473
Alignment:
| Q |
179 |
caggggcggacctgagtttacaatattagtggggcacaatttttcatc-aaacaaattgtagtttaaagaataagaaaag |
257 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||| || ||| | ||||||||||||||||||||||||| |
|
|
| T |
31529552 |
caggggcggacctggacttacaatattagtgaggcacaattttttgtcaaaatagattgtagtttaaagaataagaaaag |
31529473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University