View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20495_high_2 (Length: 476)

Name: NF20495_high_2
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20495_high_2
NF20495_high_2
[»] chr6 (10 HSPs)
chr6 (206-461)||(13688263-13688518)
chr6 (206-458)||(13670095-13670347)
chr6 (206-461)||(13694379-13694634)
chr6 (11-140)||(13688584-13688713)
chr6 (35-140)||(13669924-13670029)
chr6 (244-439)||(13724850-13725045)
chr6 (250-439)||(13695526-13695715)
chr6 (38-140)||(13694700-13694802)
chr6 (74-136)||(13724680-13724742)
chr6 (74-134)||(13695350-13695410)
[»] chr7 (3 HSPs)
chr7 (300-392)||(30858611-30858703)
chr7 (331-392)||(30817181-30817242)
chr7 (250-394)||(30853289-30853433)
[»] chr8 (1 HSPs)
chr8 (339-380)||(35060848-35060889)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 206 - 461
Target Start/End: Complemental strand, 13688518 - 13688263
Alignment:
Q  206 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 305  Q
    ||||||||||||| |||| ||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  13688518 cacttctaacaatctctttctcatcagcaacagctcttactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagcgg 13688419  T
Q  306 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 405  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13688418 cattgcaatcagtggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 13688319  T
Q  406 agttgtggacaccatgtcactattaaacctttctttgatgattccacaaacccttt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13688318 agttgtggacaccatgtcactattaaacctttctttgatgattccacatacccttt 13688263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 206 - 458
Target Start/End: Original strand, 13670095 - 13670347
Alignment:
Q  206 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 305  Q
    ||||||||||||| ||||  |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13670095 cacttctaacaatctctttttcatcagcaatagctctaactcccattttccaaacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 13670194  T
Q  306 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  13670195 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactaaa 13670294  T
Q  406 agttgtggacaccatgtcactattaaacctttctttgatgattccacaaaccc 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13670295 agttgtggacaccatgtcactattaaacctttctttgatgattccacataccc 13670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 206 - 461
Target Start/End: Complemental strand, 13694634 - 13694379
Alignment:
Q  206 cacttctaacaatgtcttcctcattagcaacagctctaactcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtgg 305  Q
    ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||    
T  13694634 cacttctaacaatctctttctcatcagcaacagctctaactcccattttccacacatcagcaataaactttgcattcgtagcttgatcggtccaaagcgg 13694535  T
Q  306 cattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagt 405  Q
    |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  | | |||||||||||||||||||  |    
T  13694534 cattgcaatcaatggtacaccaatgctcaaagcttccaacgtcgagttccaaccacagtgtgtcacaaaacatgccacagcttcatgtgttaacacttct 13694435  T
Q  406 agttgtggacaccatgtcactattaaacctttctttgatgattccacaaacccttt 461  Q
    | ||||||||||||||||||||||||||| ||||| |||| |||  ||||||||||    
T  13694434 aattgtggacaccatgtcactattaaaccattcttcgatgtttcttcaaacccttt 13694379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 13688713 - 13688584
Alignment:
Q  11 cacagaccaattttatcaatttttatgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacaga 110  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13688713 cacacaccaattttgtcaattttaatgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacaga 13688614  T
Q  111 atccttagccaaattcttccatttcaaagc 140  Q
    |  |||||||||||||||||||||||||||    
T  13688613 actcttagccaaattcttccatttcaaagc 13688584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 13669924 - 13670029
Alignment:
Q  35 atgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13669924 atgcatctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 13670023  T
Q  135 caaagc 140  Q
    ||||||    
T  13670024 caaagc 13670029  T

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Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 244 - 439
Target Start/End: Original strand, 13724850 - 13725045
Alignment:
Q  244 actcccattttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttcca 343  Q
    ||||| |||||||| |||||| |||||| ||||||||| || | |||||| |||||||||||||||||||||| | |||| || |  |||||||||||||    
T  13724850 actccaattttccaaacatcaacaataaactttgcatttgtgatttgatctgtccaaagtggcattgcaatcaccagaactccaacactcaaagcttcca 13724949  T
Q  344 acgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagtagttgtggacaccatgtcactattaaacctttct 439  Q
    | ||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||| ||||||  | || |||||||||||||    
T  13724950 atgtcgagttccaaccacaatgtgttacaaaacaaccaacagcttcatgtgttaacacttgtagttgtgaacaccaattgacaattaaacctttct 13725045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 250 - 439
Target Start/End: Original strand, 13695526 - 13695715
Alignment:
Q  250 attttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcg 349  Q
    |||||||| |||||| |||||| ||||||||| |||| |||||| ||||||| |||||| ||||||| |||||| || |  |||||||||||||| || |    
T  13695526 attttccatacatcaacaataaactttgcatttgtaatttgatcagtccaaattggcatcgcaatcatcggaactcctaaactcaaagcttccaatgttg 13695625  T
Q  350 agttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtgttaacactagtagttgtggacaccatgtcactattaaacctttct 439  Q
    | ||||||||||||||||| |||||||| || | |||||||||||  ||||||  ||||||| |||||||||||||||| ||||||||||    
T  13695626 aattccaaccacaatgtgttacaaaacatccaacagcttcatgtgcaaacacttctagttgttgacaccatgtcactatcaaacctttct 13695715  T

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Target: chr6; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 13694802 - 13694700
Alignment:
Q  38 catctcaacattgagccaaagcagccacaaattcttcaatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccatttcaa 137  Q
    |||||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  13694802 catctcaatattgagtcaaagcagccacaaattcttctatattcttatcagatcttccaccctcatcaacagaactcttagccaaattcttccatttcaa 13694703  T
Q  138 agc 140  Q
    |||    
T  13694702 agc 13694700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 136
Target Start/End: Original strand, 13724680 - 13724742
Alignment:
Q  74 caatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccatttca 136  Q
    ||||||| |||| ||| |||||| ||||| ||||||||  | |||||||||||||||||||||    
T  13724680 caatattcttatgagaacttccatcctcaccaacagaaatcctagccaaattcttccatttca 13724742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 13695350 - 13695410
Alignment:
Q  74 caatatttttatcagatcttccaccctcatcaacagaatccttagccaaattcttccattt 134  Q
    ||||||| |||||||| ||||||||||||||||| || | ||| | || ||||||||||||    
T  13695350 caatattcttatcagaacttccaccctcatcaactgatttcttcgacacattcttccattt 13695410  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 30858611 - 30858703
Alignment:
Q  300 aagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatg 392  Q
    ||||||||||||||  |  ||||| || || |||||||||||||| || || ||||||||||||||||| |||||||| ||||  ||||||||    
T  30858611 aagtggcattgcaacaattggaactcctatactcaaagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatg 30858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 30817181 - 30817242
Alignment:
Q  331 ctcaaagcttccaacgtcgagttccaaccacaatgtgtcacaaaacaacctaaagcttcatg 392  Q
    |||||||||||||| || || ||||||||||||||||| |||||||| ||||  ||||||||    
T  30817181 ctcaaagcttccaatgtggaattccaaccacaatgtgttacaaaacaccctattgcttcatg 30817242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 30853289 - 30853433
Alignment:
Q  250 attttccacacatcagcaataagctttgcattcgtaacttgatcggtccaaagtggcattgcaatcaacggaacaccgatgctcaaagcttccaacgtcg 349  Q
    |||||||| |||||  |||||| ||||||||| ||   |||||| | |||  ||||||||||||  |  ||||| || | ||| | ||||||||| || |    
T  30853289 attttccaaacatcttcaataaactttgcattggtggattgatctgaccattgtggcattgcaacaattggaactcctaagctaatagcttccaatgtgg 30853388  T
Q  350 agttccaaccacaatgtgtcacaaaacaacctaaagcttcatgtg 394  Q
    | ||||||||||||||||| |||||||| |||| || ||||||||    
T  30853389 aattccaaccacaatgtgttacaaaacaccctatagattcatgtg 30853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 35060889 - 35060848
Alignment:
Q  339 ttccaacgtcgagttccaaccacaatgtgtcacaaaacaacc 380  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  35060889 ttccaaagtcgagttccaaccacaatgagtcaaaaaacaacc 35060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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