View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20495_low_11 (Length: 240)
Name: NF20495_low_11
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20495_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 38176618 - 38176826
Alignment:
| Q |
18 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38176618 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgct |
38176717 |
T |
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| Q |
118 |
gaacttgtgtagtagcagaatttgtagcagcttgccattgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagttgaccatccca |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38176718 |
gaacttgtgtagtagcagaatttctagcagcttgccattgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagctgaccatccca |
38176817 |
T |
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| Q |
218 |
taccttgtc |
226 |
Q |
| |
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||||||||| |
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| T |
38176818 |
taccttgtc |
38176826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 1527003 - 1526795
Alignment:
| Q |
18 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1527003 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgct |
1526904 |
T |
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| Q |
118 |
gaacttgtgtagtagcagaatttgtagcagcttgccattgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagttgaccatccca |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1526903 |
gaacttgtgtagtagcagaatttctagcagcttgccattgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagctgaccatccca |
1526804 |
T |
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| Q |
218 |
taccttgtc |
226 |
Q |
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||||||||| |
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| T |
1526803 |
taccttgtc |
1526795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 28626736 - 28626940
Alignment:
| Q |
18 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggtggctgccacgcaattgtatcttgcggtgattgct |
117 |
Q |
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||||||||||| ||| | ||||| |||||||||||||||||| | |||| ||||| | |||||||||||||| | || ||||||||||||||| |||| |
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| T |
28626736 |
ccaaaccggttatgtgccctgaagatggctgcatctacgtta-acttcaaaaatcatgttgctggtggctgccaggtaactgtatcttgcggtgaatgct |
28626834 |
T |
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| Q |
118 |
gaacttgtgtagtagcagaatttgtagcagcttgccattgaaataacaactcgcgcgctagctggactgctatgttactcggctgcagttgaccatccca |
217 |
Q |
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|| |||| ||||||||||||| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||| || | |
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| T |
28626835 |
gattgtgtgcagtagcagaatttcttgcggcttgccattgaaataacaactcgcgcactagctggactgctatgttactcggttgcagctcaccacccta |
28626934 |
T |
|
| Q |
218 |
tacctt |
223 |
Q |
| |
|
|||||| |
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| T |
28626935 |
tacctt |
28626940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 4319097 - 4319162
Alignment:
| Q |
18 |
ccaaaccggttctgttcactgaaaatggctgcatctacgttacatttcagaaatcccgcggctggt |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4319097 |
ccaaaccggttctgttcactgaaaatggctgcatctacattacacttcagaaatcccgcggctggt |
4319162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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