View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20495_low_12 (Length: 237)
Name: NF20495_low_12
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20495_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 10182285 - 10182500
Alignment:
| Q |
1 |
cgacactcccaaagaggttgcaccggagctgcagttacaacatgaaattgttccccggccctctcagtcgcacttcagctcaatgaggaggagggttctg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10182285 |
cgacactcccaaagaggatgcaccggagctgcagttacaacatgaaattgttcccc-----tctcagtcgcacttcagctcaatgaggaggagggttctg |
10182379 |
T |
|
| Q |
101 |
acagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtcaaagtcgcatccctttgctactgttattccgcatggctgccctattattactaa |
200 |
Q |
| |
|
|| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10182380 |
acggtgaaagtgatggcgttgaaatacatgcagattctcctgtgtcaaagtcgcatccctttgctactgttattccgcatcgctgccctattattactaa |
10182479 |
T |
|
| Q |
201 |
agacttggaaacaattcaaaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
10182480 |
agacttggaaacaattcaaaa |
10182500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26171021 - 26171236
Alignment:
| Q |
1 |
cgacactcccaaagaggttgcaccggagctgcagttacaacatgaaattgttccccggccctctcagtcgcacttcagctcaatgaggaggagggttctg |
100 |
Q |
| |
|
|||||| ||||||||| |||| ||||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26171021 |
cgacacacccaaagagattgctccggaacagcggttacaacatgaaattgttcccaca-----tcagtcgcacttcagctcaatgaggaggagggatctg |
26171115 |
T |
|
| Q |
101 |
acagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtcaaagtcgcatccctttgctactgttattccgcatggctgccctattattactaa |
200 |
Q |
| |
|
| |||||||||||| |||||||| ||| || || ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
26171116 |
atggtgaaagtgatgccaaggaaatacttgctgactcacctgtgtcaaagtcgcatcccttcgctaccgttattccgcatcgctgccctattattactaa |
26171215 |
T |
|
| Q |
201 |
agacttggaaacaattcaaaa |
221 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
26171216 |
agatttggaaacaattcaaaa |
26171236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 16225651 - 16225435
Alignment:
| Q |
2 |
gacactcccaaagaggttgcaccggagctgcagttacaacatgaaattgttccccggccctctcagtcgcacttcagctcaatgaggaggagggttctga |
101 |
Q |
| |
|
||||| ||||||||| |||| ||| | | || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16225651 |
gacacacccaaagagattgctccgaaacagcggttacaacatgaaattgttcccaca-----tcagtcgcacttcagctcaatgaggaggaggagtctga |
16225557 |
T |
|
| Q |
102 |
cagtgaaagtgatggtgtggaaatacatgcagattctcctgtgtcaaagtcgcatccctttgctactgttattccgcatggctgccctattattactaaa |
201 |
Q |
| |
|
|||||||||||| |||||||| | || || ||| ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
16225556 |
tggtgaaagtgatgccaaggaaatactctctgactcacctatgtcaaagtcgcatcccttcgctacggttattccgcatcgctgccctattattactaaa |
16225457 |
T |
|
| Q |
202 |
gacttggaaacaattcaaaatg |
223 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
16225456 |
gatttggaaacaattcaaaatg |
16225435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 637461 - 637531
Alignment:
| Q |
151 |
tcgcatccctttgctactgttattccgcatggctgccctattattactaaagacttggaaacaattcaaaa |
221 |
Q |
| |
|
|||||||| |||| ||| |||||||| ||| | || ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
637461 |
tcgcatccttttgttaccgttattccacatcgttgtcctattattactaaagacttggaaataattcaaaa |
637531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 637395 - 637452
Alignment:
| Q |
79 |
ctcaatgaggaggagggttctgacagtgaaagtgatggtgtggaaatacatgcagatt |
136 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
637395 |
ctcaatgaggatgaggggactgacagtgaaaggaatggcgtggaaatacaagcagatt |
637452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 26797259 - 26797190
Alignment:
| Q |
151 |
tcgcatccctttgctactgttattccgcatggctgccctattattact-aaagacttggaaacaattcaa |
219 |
Q |
| |
|
|||||||| ||||||||||||||||| ||| | || |||| ||||||| |||||||||| |||||||||| |
|
|
| T |
26797259 |
tcgcatccttttgctactgttattccacatcgttgtcctactattactcaaagacttgggaacaattcaa |
26797190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University