View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20495_low_6 (Length: 329)

Name: NF20495_low_6
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20495_low_6
NF20495_low_6
[»] chr3 (2 HSPs)
chr3 (16-312)||(2360916-2361214)
chr3 (158-242)||(32324558-32324642)
[»] chr1 (2 HSPs)
chr1 (194-260)||(44206014-44206080)
chr1 (195-225)||(35383248-35383278)
[»] chr4 (1 HSPs)
chr4 (193-223)||(24794544-24794574)
[»] chr6 (2 HSPs)
chr6 (194-223)||(11668502-11668531)
chr6 (194-254)||(12628197-12628257)
[»] chr2 (2 HSPs)
chr2 (172-225)||(36004551-36004604)
chr2 (192-224)||(9521230-9521262)
[»] chr8 (1 HSPs)
chr8 (185-225)||(6372471-6372511)
[»] chr7 (1 HSPs)
chr7 (195-251)||(24890494-24890550)
[»] chr5 (1 HSPs)
chr5 (192-220)||(5550638-5550666)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 2360916 - 2361214
Alignment:
Q  16 aatatcaagaaaatgatgataagatgttgcataaaacgatttgaactacaagc-tccaacgttcccactttgtttacacatacacgtgctctctctctct 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||    
T  2360916 aatatcaagaaaatgatgataagatgttgcataaaacgatttgaactacaagcctccaacattcccaccttgtttacatatacacgtgctctctctctct 2361015  T
Q  115 ctcaagtannnnnnnnnnnnnnn-gtattaatatccggtttctaggggaagggggctctagtaacccgaaatttgaccgagaggtaagtaaagtctgata 213  Q
    ||||||||                ||||||| ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||      
T  2361016 ctcaagtattattattatttttttgtattaacatccggtttttaggggaagggagctctagtaacccgaagtttgaccgagaggtaagtaaagtctgacc 2361115  T
Q  214 aaaaattgttcccactaagaatcaaactcagtttctcccaaacaattcatcctacatagagttcattaatcactcaagctaattcgcttagttcctagt 312  Q
    || |||| || |||||||||||||| ||||||||||||||||| |||||||  |||||||||||||||||||||| |||||||||||||||||| ||||    
T  2361116 aataattatttccactaagaatcaagctcagtttctcccaaacgattcatctcacatagagttcattaatcactcgagctaattcgcttagttcttagt 2361214  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 32324558 - 32324642
Alignment:
Q  158 ggggaagggggctctagtaacccgaaatttgaccgagaggtaagtaaagtctgataaaaaattgttcccactaagaatcaaactc 242  Q
    |||||| ||||| ||||||| ||| | |||| ||| ||||||||||||| |||   || |||||||||||| | |||||||||||    
T  32324558 ggggaaaggggccctagtaatccggagtttggccgggaggtaagtaaagcctggccaagaattgttcccaccaggaatcaaactc 32324642  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 44206080 - 44206014
Alignment:
Q  194 gaggtaagtaaagtctgataaaaaattgttcccactaagaatcaaactcagtttctcccaaacaatt 260  Q
    |||||||| | |||||||||||||| ||||||  |||| |||||||||||| |||||| ||||||||    
T  44206080 gaggtaagaatagtctgataaaaaactgttccacctaaaaatcaaactcagattctcctaaacaatt 44206014  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 35383278 - 35383248
Alignment:
Q  195 aggtaagtaaagtctgataaaaaattgttcc 225  Q
    |||||||||||||||||||||||||||||||    
T  35383278 aggtaagtaaagtctgataaaaaattgttcc 35383248  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 24794544 - 24794574
Alignment:
Q  193 agaggtaagtaaagtctgataaaaaattgtt 223  Q
    |||||||||||||||||||||||||||||||    
T  24794544 agaggtaagtaaagtctgataaaaaattgtt 24794574  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 11668531 - 11668502
Alignment:
Q  194 gaggtaagtaaagtctgataaaaaattgtt 223  Q
    ||||||||||||||||||||||||||||||    
T  11668531 gaggtaagtaaagtctgataaaaaattgtt 11668502  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 12628197 - 12628257
Alignment:
Q  194 gaggtaagtaaagtctgataaaaaattgttcccactaagaatcaaactcagtttctcccaa 254  Q
    |||||||||||| ||||| |||||||||||||  | || ||||||| |||| |||||||||    
T  12628197 gaggtaagtaaaatctgacaaaaaattgttccacccaacaatcaaattcaggttctcccaa 12628257  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 36004551 - 36004604
Alignment:
Q  172 tagtaacccgaaatttgaccgagaggtaagtaaagtctgataaaaaattgttcc 225  Q
    |||||||||| | |||||||| ||| ||||||||||||||  ||||||||||||    
T  36004551 tagtaacccggagtttgaccgggagttaagtaaagtctgactaaaaattgttcc 36004604  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 9521262 - 9521230
Alignment:
Q  192 gagaggtaagtaaagtctgataaaaaattgttc 224  Q
    |||||||||||||| ||||||||||||||||||    
T  9521262 gagaggtaagtaaattctgataaaaaattgttc 9521230  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 6372471 - 6372511
Alignment:
Q  185 tttgaccgagaggtaagtaaagtctgataaaaaattgttcc 225  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  6372471 tttgatcgagaggtaagtatagtttgataaaaaattgttcc 6372511  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 24890550 - 24890494
Alignment:
Q  195 aggtaagtaaagtctgataaaaaattgttcccactaagaatcaaactcagtttctcc 251  Q
    |||||||||||||||||  || ||||||||||| || ||||||||||| | ||||||    
T  24890550 aggtaagtaaagtctgaccaagaattgttcccattaggaatcaaactcgggttctcc 24890494  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 5550638 - 5550666
Alignment:
Q  192 gagaggtaagtaaagtctgataaaaaatt 220  Q
    |||||||||||||||||||||||||||||    
T  5550638 gagaggtaagtaaagtctgataaaaaatt 5550666  T

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