View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20495_low_7 (Length: 302)
Name: NF20495_low_7
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20495_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 34179991 - 34179729
Alignment:
| Q |
16 |
atcaacaatcatcttcgcgactccgtttgaaaacaaatgagagttcgaatctagagtggatcataacnnnnnnnnctttcctccaccatgttgaaaaatg |
115 |
Q |
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| T |
34179991 |
atcaacaatcatcttcgcgactccgtttgagaacaaatgagagttagaatctagagtggatcataacaaaaaaa-ctttcctccaccatgttgaaaaatg |
34179893 |
T |
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| Q |
116 |
gtgggccatcaaaggacagtccctaagagaaaaagaagagaactgactatgatatctagcaataaacagctgtctccatagagtatggcctcttcagata |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34179892 |
gtgggccatcaaaggacagtccctaagagaaaaagaagagaactaactatgatatctagcaataaacagctgtctccatagagtatggcctcttcagata |
34179793 |
T |
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| Q |
216 |
gccttccacctcctttttccaaccaaagtcatgttaaaaaggcttagatctctaacccgtatcc |
279 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34179792 |
gccttctacctcctttttccaaccaaagtcatgtgaaaaaggcttagatctctaacccgtatcc |
34179729 |
T |
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