View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20495_low_9 (Length: 267)
Name: NF20495_low_9
Description: NF20495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20495_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 43061114 - 43061299
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
161 |
Q |
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| T |
43061114 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
43061213 |
T |
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| Q |
162 |
ttaatttctgagtagtggctgctatagtctgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaa |
247 |
Q |
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| T |
43061214 |
ttaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaa |
43061299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 4775753 - 4775938
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
161 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775753 |
acagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgcagttaatggaatttgaagttcttgtaacaagttttgaacccata |
4775852 |
T |
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| Q |
162 |
ttaatttctgagtagtggctgctatagtctgatattcagcttcagttgatgattttgcaactgttggctgcttcttgcatgaccaa |
247 |
Q |
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| T |
4775853 |
ttaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttgcaattgttggttgcttcttgcatgaccaa |
4775938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 45192908 - 45192874
Alignment:
| Q |
62 |
acagggtttgcacatagatatgtagctctaatgtt |
96 |
Q |
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| T |
45192908 |
acagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
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