View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_high_12 (Length: 487)

Name: NF20496_high_12
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_high_12
NF20496_high_12
[»] chr3 (2 HSPs)
chr3 (20-472)||(25984508-25984962)
chr3 (275-356)||(926412-926493)
[»] scaffold0148 (1 HSPs)
scaffold0148 (233-440)||(33825-34029)
[»] chr8 (8 HSPs)
chr8 (266-357)||(13734636-13734727)
chr8 (234-359)||(7493691-7493813)
chr8 (272-359)||(21138315-21138402)
chr8 (274-363)||(14402540-14402629)
chr8 (266-357)||(13634224-13634314)
chr8 (263-312)||(27656311-27656360)
chr8 (239-315)||(18998988-18999064)
chr8 (292-332)||(27653233-27653273)
[»] chr2 (3 HSPs)
chr2 (239-360)||(24667742-24667863)
chr2 (274-360)||(30934143-30934229)
chr2 (263-324)||(21534725-21534786)
[»] scaffold0363 (1 HSPs)
scaffold0363 (274-363)||(16224-16313)
[»] chr7 (7 HSPs)
chr7 (236-353)||(2916482-2916599)
chr7 (263-319)||(3761154-3761210)
chr7 (274-351)||(20909999-20910076)
chr7 (280-332)||(22532071-22532123)
chr7 (273-331)||(20909313-20909371)
chr7 (300-354)||(46797339-46797393)
chr7 (292-348)||(29712169-29712225)
[»] chr5 (3 HSPs)
chr5 (263-360)||(34221329-34221426)
chr5 (263-323)||(20522316-20522376)
chr5 (272-333)||(15674335-15674396)
[»] chr4 (3 HSPs)
chr4 (280-359)||(13901164-13901241)
chr4 (292-362)||(34979224-34979294)
chr4 (263-359)||(43608434-43608530)
[»] chr1 (2 HSPs)
chr1 (273-332)||(43346859-43346918)
chr1 (266-354)||(31431965-31432053)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 25984962 - 25984508
Alignment:
Q  20 actaaaaaccaaacaaaactaaacaaatgtaaatttagtcgannnnnnnnnnnacagaaagccaaaccaaactgaattattacagcccagttcatgaagg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||           ||||||| ||||| |||||||||||||||||| ||||||||||||||    
T  25984962 actaaaaaccaaacaaaactaaacaaatgtaaatttagtcgatatttttttttacagaaaaccaaatcaaactgaattattacagtccagttcatgaagg 25984863  T
Q  120 agttaaaccaattacatccttactttgttagtgggaaagatgaatttatcctccaacccttacattcttcccttgaaaccataggttaactgccgttatg 219  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25984862 agttaaaccaattacatcattactttgttagtggggaagatgaatttatcttccaacccttacattcttcccttgaaaccataggttaactgccgttatg 25984763  T
Q  220 atttagtcagaccgttacgaaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||||    
T  25984762 atttagtcagaccgttacgaaaatatggcagaaaaaacaaacaatgtaaacaggttaaataatgcattacccgtttcttgacgtcaaatgtgtgtagaaa 25984663  T
Q  320 ccttcaagcaatcactctttaatgatttgagacaaagattgtggnnnnnnntttgtattttatgggtttttgatggaagaggaaaaaagatggtagaaga 419  Q
    |||||||| |||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||    
T  25984662 ccttcaagtaatcactctttaatgatttgagacaaagattgtgg-aaaaaattcgtattttatgggtttttgatggaagaggaaaaaagatggtagaaga 25984564  T
Q  420 gaatagtgaggtaggagtaggcttacgt---aggaacggtaattaactgtcgttga 472  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  25984563 gaatagtgaggtaggagtaggcttacgtaggaggaacggtaattaactgtcgttga 25984508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 926493 - 926412
Alignment:
Q  275 taaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaag 356  Q
    |||| |||||||| || ||||||||| | |||||| || ||||||||||  | |||||| |||| |||||||||||||||||    
T  926493 taaatgatgcattgcctgtttcttgatgacaaatgagtttagaaaccttttaacaatcattcttcaatgatttgagacaaag 926412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 233 - 440
Target Start/End: Complemental strand, 34029 - 33825
Alignment:
Q  233 gttacgaaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatc 332  Q
    ||||| |||||||| |||||||| ||||| | ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||  | |||||    
T  34029 gttacaaaaatatgtcagaaaaatcaaacaacgtaaacaagttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatc 33930  T
Q  333 actctttaatgatttgagacaaagattgtggnnnnnnntttgtattttatgggtttttgatggaagaggaaaaaagatggtagaagagaatagtgaggta 432  Q
    | | || |||||||||||||||||||||  |        ||||| |||||||||||||||||||||| ||||||||||||| ||   ||||| |||||||    
T  33929 attattcaatgatttgagacaaagattg-agaaaaaaagttgtactttatgggtttttgatggaagatgaaaaaagatggtgga--ggaataatgaggta 33833  T
Q  433 ggagtagg 440  Q
    ||||||||    
T  33832 ggagtagg 33825  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 13734727 - 13734636
Alignment:
Q  266 taaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaaga 357  Q
    ||||||||||||||||||||||||   ||||||||| ||||||| || ||||||| ||| |||||||| |||| |||||||| |||||||||    
T  13734727 taaacaggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaactttctagcaatcattcttcaatgatttcagacaaaga 13734636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 234 - 359
Target Start/End: Complemental strand, 7493813 - 7493691
Alignment:
Q  234 ttacgaaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatca 333  Q
    ||||||||||||||||||| |||  ||| |||||||   |||||||||||||||||  |||||||||||| ||||| || |||||| |||  ||||||      
T  7493813 ttacgaaaatatggcagaataaaggaacaatgtaaatgtgttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaat-- 7493716  T
Q  334 ctctttaatgatttgagacaaagatt 359  Q
     |||| ||||||||||||| ||||||    
T  7493715 -tcttaaatgatttgagaccaagatt 7493691  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 359
Target Start/End: Complemental strand, 21138402 - 21138315
Alignment:
Q  272 ggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagatt 359  Q
    ||||||||||||||||||  ||||||||| ||||||||||| ||||||||||| |||||||  |||  |||||||||| || ||||||    
T  21138402 ggttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagcaatctttctccaatgatttgaaaccaagatt 21138315  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 14402540 - 14402629
Alignment:
Q  274 ttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagattgtgg 363  Q
    ||||||||| || |||  ||||||||||||||||||||| |||||| | || |||||||  | |||| ||||||||||||||||||||||    
T  14402540 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatccttttttattgatttgagacaaagattgtgg 14402629  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 13634314 - 13634224
Alignment:
Q  266 taaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaaga 357  Q
    ||||||||||||||||||||||||   ||||||||| ||||||| || |||||| |||  |||||||| |||| |||||||| |||||||||    
T  13634314 taaacaggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaa-cttttagcaatcattcttcaatgatttcagacaaaga 13634224  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 27656360 - 27656311
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgt 312  Q
    |||||||| | |||||||||| |||||  |||||||||||||||||||||    
T  27656360 atgtaaacggtttaaaagatgtattacttgtttcttgacgtcaaatgtgt 27656311  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 18998988 - 18999064
Alignment:
Q  239 aaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtata 315  Q
    ||||||||| ||||||||  ||  |||||||  | |||||||||||| |  ||||||||||||||||||||| ||||    
T  18998988 aaaatatggaagaaaaaagcaataatgtaaatggtttaaaagatgcaatgtcggtttcttgacgtcaaatgtatata 18999064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 27653273 - 27653233
Alignment:
Q  292 gtttcttgacgtcaaatgtgtatagaaaccttcaagcaatc 332  Q
    ||||||||||||||||||||| | ||||||||| |||||||    
T  27653273 gtttcttgacgtcaaatgtgtgtcgaaaccttctagcaatc 27653233  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 24667863 - 24667742
Alignment:
Q  239 aaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctt 338  Q
    |||| ||||||||||||  |||  |||||||||  ||| ||||||||||||| ||||||||||||||||| ||| || |||||||| |||||||  ||||    
T  24667863 aaaaaatggcagaaaaataaaaaaatgtaaacaatttacaagatgcattacctgtttcttgacgtcaaatatgtgtataaaccttctagcaatctttctt 24667764  T
Q  339 taatgatttgagacaaagattg 360  Q
     |||||||| |  |||||||||    
T  24667763 caatgattttattcaaagattg 24667742  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 360
Target Start/End: Complemental strand, 30934229 - 30934143
Alignment:
Q  274 ttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagattg 360  Q
    |||||| || ||||| | |||| ||||| | |||||||| |||||||| || | |||||  |||| |||||||||||||||||||||    
T  30934229 ttaaaatatacattatctgttttttgacattaaatgtgtgtagaaaccatctaacaatccttcttcaatgatttgagacaaagattg 30934143  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 21534786 - 21534725
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttc 324  Q
    |||||||| ||||||||  |||||||||  ||| |||| ||||||||||| |||||||||||    
T  21534786 atgtaaacgggttaaaatttgcattacctattttttgatgtcaaatgtgtgtagaaaccttc 21534725  T

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Target: scaffold0363 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 16313 - 16224
Alignment:
Q  274 ttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagattgtgg 363  Q
    ||||||||| || |||  ||||||||||||||||||||| |||||| | || |||||||  | |||| ||||||||||||||||||||||    
T  16313 ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatccttttttattgatttgagacaaagattgtgg 16224  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 2916482 - 2916599
Alignment:
Q  236 acgaaaatatggcagaaaaaacaaactatgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcact 335  Q
    |||||||||||||||| |||   ||  |||||||| ||| ||||||| || |||  ||||||||||||||||||  ||||||||||||| |||| ||  |    
T  2916482 acgaaaatatggcagagaaatgcaataatgtaaaccggtaaaaagatacaatacatgtttcttgacgtcaaatgaatatagaaaccttctagcattcctt 2916581  T
Q  336 ctttaatgatttgagaca 353  Q
    ||| ||||||||||||||    
T  2916582 cttcaatgatttgagaca 2916599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 3761210 - 3761154
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaa 319  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  3761210 atgtaaacgtgttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaa 3761154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 20909999 - 20910076
Alignment:
Q  274 ttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgaga 351  Q
    ||||||||| ||||||| |||| |||||||||||| ||| || |||||||| | |||||| |||  ||||||||||||    
T  20909999 ttaaaagattcattacctgttttttgacgtcaaatatgtgtaaaaaccttctatcaatcattctccaatgatttgaga 20910076  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 332
Target Start/End: Original strand, 22532071 - 22532123
Alignment:
Q  280 gatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatc 332  Q
    |||||| ||||  |||||||||||||||||||| ||||||||||| |||||||    
T  22532071 gatgcaatacctatttcttgacgtcaaatgtgtgtagaaaccttctagcaatc 22532123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 20909313 - 20909371
Alignment:
Q  273 gttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaat 331  Q
    |||||||||| |||| |  |||| |||||||||||||||| ||||||||||| ||||||    
T  20909313 gttaaaagattcattccttgttttttgacgtcaaatgtgtgtagaaaccttctagcaat 20909371  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 46797393 - 46797339
Alignment:
Q  300 acgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaa 354  Q
    |||||||||| || || |||||||| |||||||||| || |||||||||||||||    
T  46797393 acgtcaaatgagtgtaaaaaccttctagcaatcacttttcaatgatttgagacaa 46797339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 29712169 - 29712225
Alignment:
Q  292 gtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttg 348  Q
    ||||||||||||||||||||| ||||||  ||| |||||||| |||  |||||||||    
T  29712169 gtttcttgacgtcaaatgtgtgtagaaattttctagcaatcattctacaatgatttg 29712225  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 34221426 - 34221329
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagattg 360  Q
    |||||||  ||||||||||||||||||  |||| || ||||||||||||| |||||  |||| | |||||  ||||||||||||||||| ||||||||    
T  34221426 atgtaaatcggttaaaagatgcattacttgtttattaacgtcaaatgtgtgtagaagtcttctaacaatccttctttaatgatttgagataaagattg 34221329  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 323
Target Start/End: Original strand, 20522316 - 20522376
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaacctt 323  Q
    |||||||| |||||||||||||| |||  |||||||||| |||||||| ||||||||||||    
T  20522316 atgtaaacgggttaaaagatgcaatacttgtttcttgacatcaaatgtttatagaaacctt 20522376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 333
Target Start/End: Original strand, 15674335 - 15674396
Alignment:
Q  272 ggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatca 333  Q
    ||||||||||| ||||||| ||||||||||| |||||| || ||||||  ||| ||||||||    
T  15674335 ggttaaaagatacattacctgtttcttgacgccaaatgagtgtagaaattttctagcaatca 15674396  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 13901164 - 13901241
Alignment:
Q  280 gatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagatt 359  Q
    |||||||||||  |||||||||||||||||||| ||||||||||| |||||||| |||  |||||||||| || ||||||    
T  13901164 gatgcattacc--tttcttgacgtcaaatgtgtgtagaaaccttctagcaatcattctccaatgatttgaaaccaagatt 13901241  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 34979294 - 34979224
Alignment:
Q  292 gtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagattgtg 362  Q
    ||||||||| ||||||||||| ||||||||||| |||||||  |||| ||||||||  ||| |||||||||    
T  34979294 gtttcttgatgtcaaatgtgtgtagaaaccttctagcaatccttcttcaatgatttatgactaagattgtg 34979224  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 43608530 - 43608434
Alignment:
Q  263 atgtaaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaaagatt 359  Q
    |||||||||| ||||||||| ||||||  | || ||||||||||| |||| || ||| |||| | |||||  |||| ||||||||||  ||||||||    
T  43608530 atgtaaacagattaaaagatacattacttgatttttgacgtcaaacgtgtgtaaaaatcttctaccaatccttcttcaatgatttgatgcaaagatt 43608434  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 273 - 332
Target Start/End: Complemental strand, 43346918 - 43346859
Alignment:
Q  273 gttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatc 332  Q
    |||||||||||||||||  |||| |||||| ||||| ||| ||||||||||| |||||||    
T  43346918 gttaaaagatgcattacttgtttgttgacgccaaatatgtgtagaaaccttctagcaatc 43346859  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 354
Target Start/End: Original strand, 31431965 - 31432053
Alignment:
Q  266 taaacaggttaaaagatgcattaccggtttcttgacgtcaaatgtgtatagaaaccttcaagcaatcactctttaatgatttgagacaa 354  Q
    ||||| |||||||||||||| ||   ||| ||| | ||| ||||||| |||||  |||| |||||||| |||| |||||||||||||||    
T  31431965 taaacgggttaaaagatgcaataaatgttactttatgtcgaatgtgtgtagaattcttctagcaatcattcttcaatgatttgagacaa 31432053  T

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