View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20496_high_2 (Length: 685)
Name: NF20496_high_2
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 674; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 681
Target Start/End: Original strand, 1831928 - 1832609
Alignment:
| Q |
1 |
tcaaaacaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831928 |
tcaaaacaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc |
1832027 |
T |
|
| Q |
101 |
ttagttaagtaatgttttattgacctccattacgcgggg-aaaaaactatttaaacaatgtatcattaataaacttgcaatgcaattcaaaaacttaagg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832028 |
ttagttaagtaatgttttattgacctccattacgcgggggaaaaaactatttaaacaatgtatcattaataaacttgcaatgcaattcaaaaacttaagg |
1832127 |
T |
|
| Q |
200 |
ctaggagaataatgattaatgttcttaattggtttattctagaagaggttgaaatattctatcaattagttgttagatgcgccatgtgtggttgatctag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832128 |
ctaggagaataatgattaatgttcttaattggtttattctagaagaggttgaaatattctatcaattagttgttagatgcgccatgtgtggttgatctag |
1832227 |
T |
|
| Q |
300 |
ctatcttgctatgtgtatgcattagtttttatgaacattatttagcctcgtgattggaaccaatggaaaatagataaatttcttcttatttcatctatga |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1832228 |
ctatcttgctatgtgtatgcattagtttttatgaacattatttagcctcgtgattggaaccaatggaaaatagataaatttcttcttatttcatctatga |
1832327 |
T |
|
| Q |
400 |
tttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttcttctctttggttgtaggtttcttttaatttggaccggtgaaagttg |
499 |
Q |
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| T |
1832328 |
tttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttcttctctttggttgtaggtttcttttaatttggaccggtgaaagttg |
1832427 |
T |
|
| Q |
500 |
aggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataagttaaata |
599 |
Q |
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| T |
1832428 |
aggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataagttaaata |
1832527 |
T |
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| Q |
600 |
ctatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcact |
681 |
Q |
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| T |
1832528 |
ctatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcact |
1832609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 1 - 681
Target Start/End: Original strand, 1866371 - 1867052
Alignment:
| Q |
1 |
tcaaaacaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866371 |
tcaaaacaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgc |
1866470 |
T |
|
| Q |
101 |
ttagttaagtaatgttttattgacctccattacgcgggg-aaaaaactatttaaacaatgtatcattaataaacttgcaatgcaattcaaaaacttaagg |
199 |
Q |
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| T |
1866471 |
ttagttaagtaatgttttattgacctccattacgcgggggaaaaaactatttaaacaatgtatcattaataaacttgcaatgcaattcaaaaacttaagg |
1866570 |
T |
|
| Q |
200 |
ctaggagaataatgattaatgttcttaattggtttattctagaagaggttgaaatattctatcaattagttgttagatgcgccatgtgtggttgatctag |
299 |
Q |
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| T |
1866571 |
ctaggagaataatgattaatgttcttaattggtttattctagaagaggttgaaatattctatcaattagttgttagatgcgccatgtgtggttgatctag |
1866670 |
T |
|
| Q |
300 |
ctatcttgctatgtgtatgcattagtttttatgaacattatttagcctcgtgattggaaccaatggaaaatagataaatttcttcttatttcatctatga |
399 |
Q |
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| T |
1866671 |
ctatcttgctatgtgtatgcattagtttttatgaacattatttagcctcgtgattggaaccaatggaaaatagataaatttcttcttatttcatctatga |
1866770 |
T |
|
| Q |
400 |
tttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttcttctctttggttgtaggtttcttttaatttggaccggtgaaagttg |
499 |
Q |
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| T |
1866771 |
tttctttacctaaattttgaagtttaacccttcttaaattggatgtacaacttcttctctttggttgtaggtttcttttaatttggaccggtgaaagttg |
1866870 |
T |
|
| Q |
500 |
aggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataagttaaata |
599 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866871 |
aggtccaacttggaccagttgaaatctgacctttgatataatattaattaatatagacgattgtgatagacactcaagtacctgatgtataagttaaata |
1866970 |
T |
|
| Q |
600 |
ctatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcact |
681 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1866971 |
ctatccaagcctagtgtaagagtgaccacacagtagcaattttatcattggaaaatacaattttaccccttttcatttcact |
1867052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 2543740 - 2543856
Alignment:
| Q |
2 |
caaaacaaaattgtctctgctcaaccaggaacaaaaacttattctcagtgtaaaaatgctcatggaaccgctacaaatactattccaagtgtcacttgct |
101 |
Q |
| |
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|||||||| ||||| |||||||||||||||| || ||| |||| |||| |||||| |||||||| |||| ||||||| |||||| |||| |||||| |
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| T |
2543740 |
caaaacaacattgtttctgctcaaccaggaaagaaggcttcttctttttgtacaaatgcccatggaactgctagaaatactgttccaaatgtcccttgct |
2543839 |
T |
|
| Q |
102 |
tagttaagtaatgtttt |
118 |
Q |
| |
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|| | ||||||| |||| |
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| T |
2543840 |
tattaaagtaatttttt |
2543856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 554
Target Start/End: Complemental strand, 35534317 - 35534251
Alignment:
| Q |
488 |
cggtgaaagttgaggtccaacttggaccagttgaaatctgacctttgatataatattaattaatata |
554 |
Q |
| |
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|||||||||||||||| |||||||||| |||| || |||||||||||||||| || ||||||||||| |
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| T |
35534317 |
cggtgaaagttgaggttcaacttggactagttaaagtctgacctttgatatattaataattaatata |
35534251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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