View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_high_21 (Length: 406)

Name: NF20496_high_21
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_high_21
NF20496_high_21
[»] chr1 (6 HSPs)
chr1 (21-404)||(33160979-33161362)
chr1 (293-405)||(30827569-30827681)
chr1 (294-404)||(29690985-29691095)
chr1 (294-404)||(29718497-29718607)
chr1 (295-404)||(29658471-29658580)
chr1 (129-269)||(30827714-30827855)
[»] chr6 (15 HSPs)
chr6 (223-383)||(7132110-7132270)
chr6 (218-391)||(7993635-7993796)
chr6 (218-391)||(6403366-6403545)
chr6 (229-346)||(6427023-6427140)
chr6 (129-384)||(6423709-6423961)
chr6 (218-349)||(6432678-6432800)
chr6 (72-183)||(14809701-14809812)
chr6 (200-349)||(6410533-6410683)
chr6 (218-263)||(6436833-6436878)
chr6 (315-404)||(6594141-6594230)
chr6 (218-261)||(10579184-10579227)
chr6 (118-181)||(19633104-19633167)
chr6 (274-392)||(10579306-10579424)
chr6 (72-104)||(6395615-6395647)
chr6 (119-183)||(6596225-6596289)
[»] chr5 (2 HSPs)
chr5 (308-391)||(20477619-20477702)
chr5 (194-256)||(17205662-17205724)
[»] chr4 (3 HSPs)
chr4 (121-183)||(553761-553823)
chr4 (309-349)||(3438182-3438222)
chr4 (123-183)||(55907669-55907729)
[»] chr2 (1 HSPs)
chr2 (123-183)||(1036605-1036665)
[»] chr7 (1 HSPs)
chr7 (121-183)||(10615715-10615777)
[»] chr8 (1 HSPs)
chr8 (142-183)||(32151970-32152011)


Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 21 - 404
Target Start/End: Complemental strand, 33161362 - 33160979
Alignment:
Q  21 gacctctcccactatggctatgaactagatgagcttctccgcaaaatctataatttcccattgaaactctcatcactcaaactccccgaaggacgcgcct 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161362 gacctctcccactatggctatgaactagatgagcttctccgcaaaatctataatttcccattgaaactctcatcactcaaactccccgaaggacgcgcct 33161263  T
Q  121 ttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgttgttcccatgtttttggtgataacaacgacctttcact 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33161262 ttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgttgttctcatgtttttggtgataacaacgacctttcact 33161163  T
Q  221 cgttgccaattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatcc 320  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161162 cgttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatcc 33161063  T
Q  321 aactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttccctttgcttctt 404  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||    
T  33161062 aactgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttctt 33160979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 293 - 405
Target Start/End: Complemental strand, 30827681 - 30827569
Alignment:
Q  293 cattaatggatttcactctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttc 392  Q
    ||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||| | |  ||||| || ||| |||||||||||||||||||| |||    
T  30827681 cattaatggatttcaatctctcttgtccaactctccatatatacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttc 30827582  T
Q  393 cctttgcttcttc 405  Q
     ||||||||||||    
T  30827581 tctttgcttcttc 30827569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 29690985 - 29691095
Alignment:
Q  294 attaatggatttcactctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttcc 393  Q
    ||||||||| ||  |||||| |||||||||| || ||||||||||||||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||     
T  29690985 attaatggaattagctctctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttct 29691084  T
Q  394 ctttgcttctt 404  Q
    ||||| |||||    
T  29691085 ctttgtttctt 29691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 294 - 404
Target Start/End: Original strand, 29718497 - 29718607
Alignment:
Q  294 attaatggatttcactctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttcc 393  Q
    ||||||||| ||  |||||| |||||||||| || ||||||||||||||||||||| | ||||||| ||| ||| ||||||||||||||||||||||||     
T  29718497 attaatggaattagctctctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttct 29718596  T
Q  394 ctttgcttctt 404  Q
    ||||| |||||    
T  29718597 ctttgtttctt 29718607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 29658471 - 29658580
Alignment:
Q  295 ttaatggatttcactctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttccc 394  Q
    |||||||| || ||||||| |||||||||| ||  |||||||||||||||||||| | || |||| | | ||| |||||||||||||||||||||||| |    
T  29658471 ttaatggaattaactctctgttatccaactctccgtatatacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctc 29658570  T
Q  395 tttgcttctt 404  Q
    |||| |||||    
T  29658571 tttgtttctt 29658580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 269
Target Start/End: Complemental strand, 30827855 - 30827714
Alignment:
Q  129 aatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgttgttcccatgtttttggtgataacaacgacctttc---actcgttg 225  Q
    ||||||||||   |||||||| | ||||||| | |||| |||||||||||||  |||||||||| || |  |||||||||| |||| |    |||| |||    
T  30827855 aatggcttgcaggctttctccaagaccattacatctttaacttctctcactt--tgttcccatgcttattttgataacaaccacctcttgttactcattg 30827758  T
Q  226 ccaattgtttccctttgctcaaaaaactcaacctcggtcaccct 269  Q
    || |||||||||||||||||||| |||||||||||  |||||||    
T  30827757 ccgattgtttccctttgctcaaacaactcaacctctctcaccct 30827714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 223 - 383
Target Start/End: Complemental strand, 7132270 - 7132110
Alignment:
Q  223 ttgccaattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 322  Q
    ||||| ||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| |||||||||||||||||| |||||| | | ||||||||    
T  7132270 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaa 7132171  T
Q  323 ctgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgtt 383  Q
     || | || ||||||||||||| |||| |    ||| |||| |||||||||| ||||||||    
T  7132170 gtggcgatgtatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtt 7132110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 391
Target Start/End: Original strand, 7993635 - 7993796
Alignment:
Q  218 actcgttgccaattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctctta 317  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||            ||||| |||||| || |||||||| |||||||| | | ||     
T  7993635 actcattgccaattgtttccctttgctcaaagaactcaacctcggtc------------acaatgacactagctacattaatgaatttcactatttgttg 7993722  T
Q  318 tccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagtt 391  Q
    ||||| |||| || |||||||||||| ||||| |||   | ||||| ||||||||||| ||||||||| |||||    
T  7993723 tccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagtt 7993796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 391
Target Start/End: Complemental strand, 6403545 - 6403366
Alignment:
Q  218 actcgttgccaattgtttccctttgctcaaaaaactcaacctcggtcaccct-------cagttcaacaatcacactaacttcattaatggatttcactc 310  Q
    |||| ||||| |||||||||||  ||||||| ||||||||||||||||| ||       |||  ||| ||| ||||| |||| ||||||||| |  ||||    
T  6403545 actcattgccgattgtttccctaagctcaaacaactcaacctcggtcactctttaaacacagg-caaaaatgacactgactttattaatggaatatactc 6403447  T
Q  311 tctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagtt 391  Q
    ||| |||||||| |||  || |||||||||||||||||| ||| ||| ||||| ||||||||||  ||||||||| |||||    
T  6403446 tctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagtt 6403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 346
Target Start/End: Complemental strand, 6427140 - 6427023
Alignment:
Q  229 attgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaactgtca 328  Q
    |||||||||||||||||||| |||||||||||  |||||||  | ||| |||| |  ||||||||||||||  | |||||| | | |||||||| ||||     
T  6427140 attgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaagtgtcc 6427041  T
Q  329 atatatacaacatttgga 346  Q
    || |||||||||||||||    
T  6427040 atgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 384
Target Start/End: Complemental strand, 6423961 - 6423709
Alignment:
Q  129 aatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgttgttcccatgtttttggtgataacaacgacctttcactcgttgcca 228  Q
    ||||| |||||| |||||||||||| ||| | ||||||||| |||||||||||||  |  ||||||| |      |||| |||||| | ||| || ||||    
T  6423961 aatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgtt-atagcatgtttct--ctccaacaccgacctgttacttgtggcca 6423865  T
Q  229 attgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaactgtca 328  Q
    |||||||||| ||||||||| |||||||||||   | ||||  | ||| | || | ||||| |||||||||||| ||| |  | | |||||||| |||||    
T  6423864 attgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtca 6423765  T
Q  329 atatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttg 384  Q
    || ||||||||||||| ||||  |   || ||||| |||||| |||||||||||||    
T  6423764 atgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgttg 6423709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 6432800 - 6432678
Alignment:
Q  218 actcgttgccaattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctctta 317  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||| ||    || ||||||||||         ||||| |||||| ||||| |||    
T  6432800 actcattgccgattgtttccctttgctcaaacaactcaaccttggtcacacttttatccacaatcacac---------taatgcatttcaatctctatta 6432710  T
Q  318 tccaactgtcaatatatacaacatttggatct 349  Q
    ||||| |||  |||||||||||||||||||||    
T  6432709 tccaagtgtagatatatacaacatttggatct 6432678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 14809812 - 14809701
Alignment:
Q  72 aatttcccattgaaactctcatcactcaaactccccgaaggacgcgcctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgactt 171  Q
    |||||||||||||||||| |||| || ||||||||| |   | || |||||||||| || || |||| |  ||||||||||| ||||| ||||||| | |    
T  14809812 aatttcccattgaaactcacatccctaaaactccccaagacatgcacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcct 14809713  T
Q  172 ctctcacttgtt 183  Q
    ||||||||||||    
T  14809712 ctctcacttgtt 14809701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 349
Target Start/End: Complemental strand, 6410683 - 6410533
Alignment:
Q  200 tgataacaacgacctttcactcgttgccaattgtttccctttgctcaaaaaactcaa-cctcggtcaccctcagttcaacaatcacactaacttcattaa 298  Q
    |||||||||| ||||   |||| ||||  |||||||||| ||||||||| ||||||| ||||  |||||||  ||||||  |||   |||| ||||||||    
T  6410683 tgataacaacaacctgatactctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaa 6410584  T
Q  299 tggatttcactctctcttatccaactgtcaatatatacaacatttggatct 349  Q
    |||| |||||| ||| |||||||| || |||| | |||||||| |||||||    
T  6410583 tggaattcactatctgttatccaagtgccaatgtttacaacatatggatct 6410533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 6436878 - 6436833
Alignment:
Q  218 actcgttgccaattgtttccctttgctcaaaaaactcaacctcggt 263  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    
T  6436878 actcattgccgattgtttccctttgctcaaacaactcaacctcggt 6436833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 404
Target Start/End: Original strand, 6594141 - 6594230
Alignment:
Q  315 ttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagttccctttgcttctt 404  Q
    |||||||| |||| || ||||||||||||| |||| ||  || ||  || |||||||||||||||||||||||||||  ||||| |||||    
T  6594141 ttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtttctt 6594230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 10579184 - 10579227
Alignment:
Q  218 actcgttgccaattgtttccctttgctcaaaaaactcaacctcg 261  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||    
T  10579184 actcgttgccgattgtttcccattgctcaaagaactcaacctcg 10579227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 19633167 - 19633104
Alignment:
Q  118 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttg 181  Q
    |||||||| | ||||| |||||| |||||||| ||| ||||| ||||||||| |||||||||||    
T  19633167 cctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacctctctcacttg 19633104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 392
Target Start/End: Original strand, 10579306 - 10579424
Alignment:
Q  274 tcaacaatcacactaacttcattaatggatttcactctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatga 373  Q
    |||||||||  ||| | |||||||||||| |||||||||| ||||| || |||| || ||| |||||||||  |||  |  |||||| || ||| |||||    
T  10579306 tcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgagtctttacaacactttttttcttaatga 10579405  T
Q  374 tcaacatgttgccgagttc 392  Q
    |  ||||||||||||||||    
T  10579406 tacacatgttgccgagttc 10579424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 6395647 - 6395615
Alignment:
Q  72 aatttcccattgaaactctcatcactcaaactc 104  Q
    |||||||||||||||||| ||||||||||||||    
T  6395647 aatttcccattgaaactcacatcactcaaactc 6395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 6596225 - 6596289
Alignment:
Q  119 ctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    |||||||||| | || ||||||  ||||||||||| ||| | ||||||||| |||||||||||||    
T  6596225 ctttcccgctgacgggttgcgagttttctcccaaaacataacaactttgacctctctcacttgtt 6596289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 20477619 - 20477702
Alignment:
Q  308 ctctctcttatccaactgtcaatatatacaacatttggatctaaatcacacttattctctgaatgatcaacatgttgccgagtt 391  Q
    |||||| |||||||| |||| || ||||||||||||||||||  |  | ||||||| |||||||||||||| ||||||||||||    
T  20477619 ctctctattatccaagtgtccatgtatacaacatttggatcttcaaaagacttattttctgaatgatcaacttgttgccgagtt 20477702  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 17205724 - 17205662
Alignment:
Q  194 ttttggtgataacaacgacctttcactcgttgccaattgtttccctttgctcaaaaaactcaa 256  Q
    ||||| ||||||| | ||||| | |||| ||||| |||||||||||||||||||| |||||||    
T  17205724 ttttgttgataactatgacctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 553823 - 553761
Alignment:
Q  121 ttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    ||||||| ||||| |||||| |||||||||||| ||||| ||||||||| |||||||| ||||    
T  553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctcacctgtt 553761  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 3438182 - 3438222
Alignment:
Q  309 tctctcttatccaactgtcaatatatacaacatttggatct 349  Q
    ||||| |||||||| ||||||| ||||||||||||||||||    
T  3438182 tctctgttatccaagtgtcaatgtatacaacatttggatct 3438222  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 55907669 - 55907729
Alignment:
Q  123 cccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    ||||||| |||||| ||| ||||||||||||  |||| |||||||| |||||||| |||||    
T  55907669 cccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgtt 55907729  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 1036605 - 1036665
Alignment:
Q  123 cccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    ||||||| |||||| ||| ||||||||||||  |||| ||||||||||||||||| |||||    
T  1036605 cccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgtt 1036665  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 10615777 - 10615715
Alignment:
Q  121 ttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    ||||||| ||||| || ||| ||||||||||||  |||| ||||||||| |||||||||||||    
T  10615777 ttcccgcaaatgggttacgagctttctcccaaaagattacaactttgacctctctcacttgtt 10615715  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 32152011 - 32151970
Alignment:
Q  142 ctttctcccaaaccattaaaactttgacttctctcacttgtt 183  Q
    |||||||||||| ||||| ||||||||| |||||||||||||    
T  32152011 ctttctcccaaaacattacaactttgacctctctcacttgtt 32151970  T

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