View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20496_high_25 (Length: 398)

Name: NF20496_high_25
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20496_high_25
NF20496_high_25
[»] chr3 (11 HSPs)
chr3 (8-383)||(27069410-27069785)
chr3 (15-383)||(27062343-27062711)
chr3 (19-345)||(27056340-27056665)
chr3 (19-219)||(27085630-27085830)
chr3 (63-219)||(27041193-27041349)
chr3 (9-195)||(27045589-27045775)
chr3 (23-372)||(27098146-27098492)
chr3 (22-363)||(27105154-27105492)
chr3 (246-371)||(27041071-27041196)
chr3 (246-371)||(27085508-27085633)
chr3 (311-372)||(27045409-27045470)
[»] chr6 (1 HSPs)
chr6 (260-327)||(19414202-19414269)


Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Complemental strand, 27069785 - 27069410
Alignment:
Q  8 ctgaatatgttagttggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaa 107  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27069785 ctgaatatgttagttggtatgagacgtaacttgatggattttgatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaa 27069686  T
Q  108 aagtgagtgagctcaatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaat 207  Q
    |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27069685 aagtgagtgagctcgatgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatatttctttcaccactgattatgttactaattcaat 27069586  T
Q  208 caactctgtggagacaaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttcat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27069585 caactctgtggagacaaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaagcatttgggttttcat 27069486  T
Q  308 gaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgctaccgttgatg 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27069485 gaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgctaccgttgatg 27069410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 383
Target Start/End: Complemental strand, 27062711 - 27062343
Alignment:
Q  15 tgttagttggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgag 114  Q
    ||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  27062711 tgttagttggtatcagacgaaacttgatggattatgaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgag 27062612  T
Q  115 tgagctcaatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaatcaactct 214  Q
    ||| ||| ||||||||||||||||  |||| |||||||| ||||||||||||||||||||| | |||||  |||||||||| |  || ||||| ||||||    
T  27062611 tgaactcgatgaaatgccactctataaaatcgttaagctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactcaataaactct 27062512  T
Q  215 gtggagacaaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttcatgaaaata 314  Q
     ||||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||| ||||||     
T  27062511 ttggagacaaatcaagaggatggtttaagcatggaattggaagctagtggtgcagtaacggttctaacagagtggaaacatttgggttttcaggaaaatt 27062412  T
Q  315 tagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgctaccgttgatg 383  Q
    ||||||||||||| |||||| | ||||||||  |||| ||||| |||||||||||||| ||||| ||||    
T  27062411 tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgccaccgtcgatg 27062343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 27056665 - 27056340
Alignment:
Q  19 agttggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgag 118  Q
    ||||||||| ||||||||||||  ||||| ||||||||||||||||||||| || || |||||||| || |||| ||| |||||||||||||||||||||    
T  27056665 agttggtattagacgcaacttggaggattatgatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtgag 27056566  T
Q  119 ctcaatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaatcaactctgtgg 218  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||   |||||||||| || || ||||| |||||| |||    
T  27056565 ctcaacgaaatgccactctatgaaattgttaagctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactcaataaactctttgg 27056466  T
Q  219 agacaaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttcatgaaaatataga 318  Q
    |||| ||||||||||| | ||| ||||||||||||||||  |||||||||||||| ||| | |  || | ||||||||||| |||||| |||||| || |    
T  27056465 agacgaatcaagaggatggtttgagcatggaattggaagatagtggtgcagtaacggttct-agtgaattgaaacatttggattttcaggaaaatttaaa 27056367  T
Q  319 ttttggaggctatgaagttgtgaattt 345  Q
    ||||| |||||||||| | ||||||||    
T  27056366 ttttgaaggctatgaattagtgaattt 27056340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 27085830 - 27085630
Alignment:
Q  19 agttggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgag 118  Q
    ||||||||  ||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||  || |||| ||| ||||||||||||||||||| |    
T  27085830 agttggtagtagacgcaacttaaaggattatgatactttacctaaagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgtg 27085731  T
Q  119 ctcaatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaatcaactctgtgg 218  Q
    ||||| |||||||||||||| ||||   ||||||| ||||||||||||||||||||| | |||||  ||||||||||||| || ||||| |||||| |||    
T  27085730 ctcaacgaaatgccactctatgaaaccattaagctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttgg 27085631  T
Q  219 a 219  Q
    |    
T  27085630 a 27085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 27041349 - 27041193
Alignment:
Q  63 aagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctcaatgaaatgccactctacgaaattgttaagctcattaaaga 162  Q
    |||||||||| || |||||||| || |||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||   ||||||| ||||||||    
T  27041349 aagggtattatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaaccattaagctgattaaaga 27041250  T
Q  163 gactaaaaatatttcgttcaccactgattatgttactaattcaatcaactctgtgga 219  Q
    ||||||||||||| | |||||  ||||||||||||| || ||||| |||||| ||||    
T  27041249 gactaaaaatattgctttcactgctgattatgttacaaactcaataaactctttgga 27041193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 27045775 - 27045589
Alignment:
Q  9 tgaatatgttagttggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaa 108  Q
    ||||||||||||||||||| ||||||| | |||  | || |||| |||| |||| ||||||||| || ||| ||||  |||||| ||||||||| |||||    
T  27045775 tgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaa 27045676  T
Q  109 agtgagtgagctcaatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgt 195  Q
    ||| |||||||||||||||||||||||||| |||||||||||| | || |||||| ||||||| ||| | | | |||||||||||||    
T  27045675 agttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagaggctaaaaagattgcttcctccactgattatgt 27045589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 23 - 372
Target Start/End: Complemental strand, 27098492 - 27098146
Alignment:
Q  23 ggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctca 122  Q
    ||||| ||||||||||||| |||||||||| |||||||||| || ||||| ||||||||     | ||||||||   ||| |||||||| |||||||||     
T  27098492 ggtattagacgcaacttgaaggattttgatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcg 27098393  T
Q  123 atgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaatcaactctgtggagac 222  Q
    |||||| ||||||||| |||||| |||||||||| | |||||||||||| ||| | | ||||||||||| ||| |  |||||||||||| |  |||||||    
T  27098392 atgaaaggccactctatgaaattattaagctcatcagagagactaaaaacattgcttccaccactgattttgtcaaaaattcaatcaacacgttggagac 27098293  T
Q  223 aaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttc---atgaaaatatagat 319  Q
     ||| |  | |||||    | || |||  ||| |   | |||||||||||| ||| ||||||||||||||||||| |||||||   ||| |||| |||||    
T  27098292 taattataacgagga----atcaagga--tggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtagat 27098199  T
Q  320 tttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgc 372  Q
    ||||| ||  | ||||  |||||||||||||||||||| ||||| ||| ||||    
T  27098198 tttggtgggaacgaagcagtgaatttagtaccagcaccatgcaacatgtttgc 27098146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 363
Target Start/End: Complemental strand, 27105492 - 27105154
Alignment:
Q  22 tggtatgagacgcaacttgatggattttgatactttacctaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctc 121  Q
    |||||| |||||||| |||| |||||||||  |||||||||| || ||||| ||||||||     | ||||||||   ||| |||||||| || ||||||    
T  27105492 tggtattagacgcaagttgaaggattttgaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctc 27105393  T
Q  122 aatgaaatgccactctacgaaattgttaagctcattaaagagactaaaaatatttcgttcaccactgattatgttactaattcaatcaactctgtggaga 221  Q
     |||||| ||||||||| |||||| |||| || || | |||||||||||| ||| | | ||||||||||| | | |  |||||||||||| |  ||||||    
T  27105392 gatgaaaggccactctatgaaattattaacctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggaga 27105293  T
Q  222 caaatcaagaggaggatttcagcatggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttc---atgaaaatataga 318  Q
    | ||| |  | ||||| | ||| |||  |   | | |    ||||||||||| ||| ||||||||||||||||||| |||||||   ||| |||| ||||    
T  27105292 cgaattataaagaggaatccaggatgctaa--gtacc----ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtaga 27105199  T
Q  319 ttttggaggctatgaagttgtgaatttagtaccagcaccgtgcaa 363  Q
    |||||| ||  ||||||  |||||||||||||||||||| |||||    
T  27105198 ttttggtgggcatgaagcagtgaatttagtaccagcaccatgcaa 27105154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 27041196 - 27041071
Alignment:
Q  246 tggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttcatgaaaatatagattttggaggctatgaagttgtgaattt 345  Q
    ||||||||||||| ||||||||||||||   | | |  |||| |||||||||||||||||| |||||| || |||||| |||||||||| | ||||||||    
T  27041196 tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattt 27041097  T
Q  346 agtaccagcaccgtgcaagatgcttg 371  Q
      || | ||||| |||||||||||||    
T  27041096 tttaactgcaccatgcaagatgcttg 27041071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 27085633 - 27085508
Alignment:
Q  246 tggaattggaagcaagtggtgcagtaacagttttgacagagtggaaacatttgggttttcatgaaaatatagattttggaggctatgaagttgtgaattt 345  Q
    ||||||||||||| ||||||||||||||   | | |  |||| |||||||||||||||||| |||||| || |||||| |||||||||| | ||||||||    
T  27085633 tggaattggaagctagtggtgcagtaacgtctctaagtgagttgaaacatttgggttttcaggaaaatttaaattttgaaggctatgaattagtgaattt 27085534  T
Q  346 agtaccagcaccgtgcaagatgcttg 371  Q
      || | ||||| |||||||||||||    
T  27085533 tttaactgcaccatgcaagatgcttg 27085508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 27045470 - 27045409
Alignment:
Q  311 aatatagattttggaggctatgaagttgtgaatttagtaccagcaccgtgcaagatgcttgc 372  Q
    ||||||||||||||||| ||||||   |||||||| ||||||||||| ||||| ||| ||||    
T  27045470 aatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc 27045409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 19414269 - 19414202
Alignment:
Q  260 agtggtgcagtaacagttttgacagagtggaaacatttgggttttcatgaaaatatagattttggagg 327  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||| | ||  || |||||||||||    
T  19414269 agtggtgcagtaacagttttgacagagtggaagcatttgggctttcagggaagcattgattttggagg 19414202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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