View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20496_high_45 (Length: 295)
Name: NF20496_high_45
Description: NF20496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20496_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 33500542 - 33500273
Alignment:
| Q |
18 |
gttatcacaatttcaaattgatttctgaatttgagaaacatttgtggaagttagtcaatttgtataaactggttagcttattaagttacaaatgctaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33500542 |
gttatcacaatttcaaattgatttctgaatttgagaaacatttgtggaagttagtcaatttgtataaactggttagcttattaagttacaaatgctaatg |
33500443 |
T |
|
| Q |
118 |
tcagttaatttcatctataaagtagtccatctgtgtgagctggttagctgataaaagtacgaatactaaatgtggca----ggttaatgtcgtatagcta |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33500442 |
tcagttaatttcctctataaagtagtccatctgtgtgagctggttagctaataaaagtacgaatactaaatgtggcaggttggttaatgtcgtatagcta |
33500343 |
T |
|
| Q |
214 |
ctaaactaacaaactcatgatattgaactgtcactctcagacgttttcttttcctcactctccctatgct |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33500342 |
ctaaactaacaaactcatgatattgaactgtcactctcaaacgttttcttttcctcactctccctatgct |
33500273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University